Author name code: bourdin ADS astronomy entries on 2022-09-14 author:"Bourdin, Philippe-A." ------------------------------------------------------------------------ Title: Electromotive force and helicity estimation of an iCME observed by SolarOrbiter Authors: Bourdin, Philippe-A. Bibcode: 2022cosp...44.1369B Altcode: Inter-planetary coronal mass ejections that are faster than the ambient solar wind are known to push a bow shock in front of them. Such fronts usually feature strongly oscillating magnetic fields that are similar to magneto-hydrodynamic turbulence or dynamo action. The electromotive force is one way of estimating the turbulent nature of such fronts, giving a way to identify the exact arrival time, even without knowing the complete following magnetic field structures. The magnetic helicity within the iCME is largely conserved during the travel of the iCME through the heliosphere. Also this handedness should be the same as found in the solar corona during the actual outbreak. We aim to estimate the handedness of the magnetic helicity by using in-situ observations from SolarOrbiter MAG and SWA-PAS data of the event around 4th of November 2021. To this end, we compute the electromotive force from the fluctuations of the magnetic field and proton velocity moments. Finally, we infer the handedness of the magnetic helicity and compare the magnitude of the electromotive force to our previous study of Helios observations in the inner heliosphere between 0.28 and 1 au. This allows us to compare the turbulent magnitude of the November 2021 event to a decade worth of inner-heliospheric observations from the Helios database. We show how the SolarOrbiter observation fits to a scaling law for the decay of the electromotive force that we deduced from Helios data. Title: Heating and cooling in an atmospheric model of the solar corona Authors: Pandey, Vartika; Bourdin, Philippe-A. Bibcode: 2022cosp...44.2482P Altcode: We investigate the solar coronal heating problems. We aim to model the field-line braiding mechanism with magnetic foot-points that are shuffled to generate an upward Poynting flux. The magnetic energy then travels into the corona. These perturbations induce electric currents that later heat the coronal plasma through Ohmic dissipation. The initial condition for large-scale magneto-hydrodynamic simulations is an atmospheric stratification but as the numerical and analytical derivatives are not identical the initial hydrodynamic equilibrium is inexact. It would not be cost-effective to settle the initial in-equilibrium in a large-scale 3D model. Therefore, we use a 1D model that spans from the solar interior to the corona for finding the numerical equilibrium under the actual MHD simulation parameters, like mass diffusion, heat conduction, viscosity, and radiative losses. This new 1D atmospheric stratification will be used as the initial condition for our large 3D simulation runs. Also, we implement an artificial heating function for the corona that compensates for a lack of heating in the early phase of the model, where the observational driving sets in and takes at least Alfvèn travel time for the perturbation to reach the corona. This way, we avoid the collapse of solar corona due to insufficient heating. This function also compensates for the natural and numerical energy losses.This allows us to start the 3D model with the most realistic physics and keep the vertical settling motions at a minimum, in particular below some m/s, which is also the observable Doppler shift magnitude in the corona.We also discuss the effects of the coronal heating and cooling mechanisms and their importance in different atmospherical layers, such as compressional heating, viscous heating, radiative losses, as well as how they balance out. This procedure finally allows us to start large-scale 3D models and get realistic vertical velocities without numerical effects, which can then be compared with Doppler shifts observed by the Hinode/EIS instrument in the corona. Title: Influence of the kinematic viscosity on solar convection simulations Authors: Tschernitz, Johannes; Bourdin, Philippe-A. Bibcode: 2022cosp...44.2553T Altcode: Numerical simulations can give insights into solar plasma processes, that would not be possible otherwise. While the computing power of modern supercomputers has increased over time, the spatial resolution is still limited. Diffusion parameters like kinematic viscosity play a major role in the numerical stability of magneto-hydrodynamic simulations. Generally, larger viscosity can make a simulation more stable, while in return it suppresses small scale turbulent motions. Therefore, the value of the simulated viscosity is often by several orders of magnitude larger than the realistic one. We perform hydrodynamic 2D simulations of solar convection with the Pencil Code in order to study the effect of different values of the kinematic viscosity on the numerical stability, the spatial scale of the convection, and the vertical velocities. Our convection simulations also include a large part of the solar atmosphere, up to 25 Mm above the surface, while including 20 Mm of the solar convection layer. We use a box of 512×384 grid points, resulting in a spatial resolution of about 125 km. Our initial condition matches the density and temperature stratification of the Sun, including a realistic gravity profile. The atmosphere is kept at the initial temperature profile by a Newton-cooling scheme, while we drive the convection from the bottom with a realistic heat input. We find that convection starts in two different regions separately after some time. The first region lies at the solar surface, where the convection is driven by cooling. The second region lies at the bottom of the box, where the convection cells are driven by the heating from below. We run the simulation setup several times with varying values of the kinematic viscosity in the range of $\sim$10$ ^{-7}$ to $\sim$10$ ^{10}$ m$ ^{2}$/s. We find that the cells at the top are dependent on the kinematic viscosity, if it is above $\sim$10$ ^{8}$ m$ ^{2}$/s, with larger values resulting in larger cells. Below this value, the size of the cells is practically constant around 2.5 Mm in diameter, and not varying for lower viscosity values. The numerical stability is affected for small viscosities and the simulation crashes before the completion of 24 hours solar time. Diffusion constants like the kinematic viscosity have to be chosen carefully for a specific problem to avoid numerical problems in the simulation domain. We find that there is an optimal choice of the viscosity with good numerical stability and only small changes of the physical behavior in the upper layers of the convection zone. Title: The Pencil Code, a modular MPI code for partial differential equations and particles: multipurpose and multiuser-maintained Authors: Pencil Code Collaboration; Brandenburg, Axel; Johansen, Anders; Bourdin, Philippe; Dobler, Wolfgang; Lyra, Wladimir; Rheinhardt, Matthias; Bingert, Sven; Haugen, Nils; Mee, Antony; Gent, Frederick; Babkovskaia, Natalia; Yang, Chao-Chin; Heinemann, Tobias; Dintrans, Boris; Mitra, Dhrubaditya; Candelaresi, Simon; Warnecke, Jörn; Käpylä, Petri; Schreiber, Andreas; Chatterjee, Piyali; Käpylä, Maarit; Li, Xiang-Yu; Krüger, Jonas; Aarnes, Jørgen; Sarson, Graeme; Oishi, Jeffrey; Schober, Jennifer; Plasson, Raphaël; Sandin, Christer; Karchniwy, Ewa; Rodrigues, Luiz; Hubbard, Alexander; Guerrero, Gustavo; Snodin, Andrew; Losada, Illa; Pekkilä, Johannes; Qian, Chengeng Bibcode: 2021JOSS....6.2807P Altcode: 2021JOSS....6.2807C; 2020arXiv200908231B The Pencil Code is a highly modular physics-oriented simulation code that can be adapted to a wide range of applications. It is primarily designed to solve partial differential equations (PDEs) of compressible hydrodynamics and has lots of add-ons ranging from astrophysical magnetohydrodynamics (MHD) to meteorological cloud microphysics and engineering applications in combustion. Nevertheless, the framework is general and can also be applied to situations not related to hydrodynamics or even PDEs, for example when just the message passing interface or input/output strategies of the code are to be used. The code can also evolve Lagrangian (inertial and noninertial) particles, their coagulation and condensation, as well as their interaction with the fluid. Title: Derfflinger's Sunspot Observations: Primary Dataset to Understand the Dalton Minimum Authors: Hayakawa, Hisashi; Besser, Bruno P.; Imada, Shinsuke; Arlt, Rainer; Iju, Tomoya; Bourdin, Philippe; Kraml, Amand; Uneme, Shoma Bibcode: 2021cosp...43E.915H Altcode: As various predictions indicate possible arrival of depressed solar cycles or even a secular/grand solar minimum, it is increasingly important to understand the actual solar activity during the existing solar secular/grand minima. The Dalton Minimum is arguably one of such solar secular/grand minima within the coverage of telescopic sunspot observations, while its sunspot group number has been differently reconstructed by various studies and its butterfly diagram has not been reconstructed. Here, we examine the original observational records of Derfflinger in Krememünster Observatory, spanning from 1802 to 1824, covering the core period of the Dalton Minimum. We revise his sunspot group number and reconstruct the butterfly diagram. These reconstructions show that the Dalton Minimum was significantly different from the Maunder Minimum, both in terms of amplitude of its solar cycles and sunspot distributions. Title: Life-time evolution and magnetic structure of coronal holes Authors: Heinemann, Stephan; Pomoell, Jens; Temmer, Manuela; Bourdin, Philippe Bibcode: 2021cosp...43E1024H Altcode: The study of the evolution of coronal holes (CHs) is especially important in the context of high--speed solar wind streams emanating from them. Slow and high speed stream interaction regions may deliver large amount of energy into the Earth's magnetosphere-termosphere-ionosphere system system, cause geomagnetic storms, and shape interplanetary space. The open magnetic structure, its evolution and interplay with the local and global fields strongly defines the coronal and solar wind properties. Only by understanding these we can attempt to create a full picture of our heliosphere. By statistically investigating the long--term evolution of 16 well observed CHs, which are distributed in time over a full solar cycle, we aim to reveal processes that drive the observed changes in the CH parameters. We use remote sensing image data from SDO and focus on coronal, morphological and underlying photospheric magnetic field characteristics as well as investigate the evolution of the associated high--speed streams from in-situ measurements. The analysis of the observational data is supported by modeling, based on synthetic data in order to simulate the small-scale magnetic field topology in 3 dimensions. We find that the CH area evolution mostly shows a rough trend of growing to a maximum followed by a decay. No correlation of the area evolution to the evolution of the signed magnetic flux and signed magnetic flux density enclosed in the projected coronal hole area was found. From this we conclude that the magnetic flux within the extracted coronal hole boundaries is not the main cause for its area evolution. This is supported by the model results. Change rates of the signed mean magnetic flux density and the signed magnetic flux are derived to be dependent on the solar cycle rather than on the evolution of the individual CH. This clearly hints towards that the global magnetic field gives significant contribution to the evolution of open magnetic field structures on the Sun. The velocities of the high speed streams emanating from the CHs are found to be linearly related to the area of the individual CH, however the slopes vary. Title: Investigating Mercury's Environment with the Two-Spacecraft BepiColombo Mission Authors: Milillo, A.; Fujimoto, M.; Murakami, G.; Benkhoff, J.; Zender, J.; Aizawa, S.; Dósa, M.; Griton, L.; Heyner, D.; Ho, G.; Imber, S. M.; Jia, X.; Karlsson, T.; Killen, R. M.; Laurenza, M.; Lindsay, S. T.; McKenna-Lawlor, S.; Mura, A.; Raines, J. M.; Rothery, D. A.; André, N.; Baumjohann, W.; Berezhnoy, A.; Bourdin, P. A.; Bunce, E. J.; Califano, F.; Deca, J.; de la Fuente, S.; Dong, C.; Grava, C.; Fatemi, S.; Henri, P.; Ivanovski, S. L.; Jackson, B. V.; James, M.; Kallio, E.; Kasaba, Y.; Kilpua, E.; Kobayashi, M.; Langlais, B.; Leblanc, F.; Lhotka, C.; Mangano, V.; Martindale, A.; Massetti, S.; Masters, A.; Morooka, M.; Narita, Y.; Oliveira, J. S.; Odstrcil, D.; Orsini, S.; Pelizzo, M. G.; Plainaki, C.; Plaschke, F.; Sahraoui, F.; Seki, K.; Slavin, J. A.; Vainio, R.; Wurz, P.; Barabash, S.; Carr, C. M.; Delcourt, D.; Glassmeier, K. -H.; Grande, M.; Hirahara, M.; Huovelin, J.; Korablev, O.; Kojima, H.; Lichtenegger, H.; Livi, S.; Matsuoka, A.; Moissl, R.; Moncuquet, M.; Muinonen, K.; Quèmerais, E.; Saito, Y.; Yagitani, S.; Yoshikawa, I.; Wahlund, J. -E. Bibcode: 2020SSRv..216...93M Altcode: 2022arXiv220213243M The ESA-JAXA BepiColombo mission will provide simultaneous measurements from two spacecraft, offering an unprecedented opportunity to investigate magnetospheric and exospheric dynamics at Mercury as well as their interactions with the solar wind, radiation, and interplanetary dust. Many scientific instruments onboard the two spacecraft will be completely, or partially devoted to study the near-space environment of Mercury as well as the complex processes that govern it. Many issues remain unsolved even after the MESSENGER mission that ended in 2015. The specific orbits of the two spacecraft, MPO and Mio, and the comprehensive scientific payload allow a wider range of scientific questions to be addressed than those that could be achieved by the individual instruments acting alone, or by previous missions. These joint observations are of key importance because many phenomena in Mercury's environment are highly temporally and spatially variable. Examples of possible coordinated observations are described in this article, analysing the required geometrical conditions, pointing, resolutions and operation timing of different BepiColombo instruments sensors. Title: Driving solar coronal MHD simulations on high-performance computers Authors: Bourdin, Philippe-A. Bibcode: 2020GApFD.114..235B Altcode: 2019arXiv190808557B The quality of today's research is often tightly limited to the available computing power and scalability of codes to many processors. For example, tackling the problem of heating the solar corona requires a most realistic description of the plasma dynamics and the magnetic field. Numerically solving such a magneto-hydrodynamical (MHD) description of a small active region (AR) on the Sun requires millions of computation hours on current high-performance computing (HPC) hardware. The aim of this work is to describe methods for an efficient parallelisation of boundary conditions and data input/output (IO) strategies that allow for a better scaling towards thousands of processors (CPUs). The Pencil Code is tested before and after optimisation to compare the performance and scalability of a coronal MHD model above an AR. We present a novel boundary condition for non-vertical magnetic fields in the photosphere, where we approach the realistic pressure increase below the photosphere. With that, magnetic flux bundles become narrower with depth and the flux density increases accordingly. The scalability is improved by more than one order of magnitude through the HPC-friendly boundary conditions and IO strategies. This work describes also the necessary nudging methods to drive the MHD model with observed magnetic fields from the Sun's photosphere. In addition, we present the upper and lower atmospheric boundary conditions (photospheric and towards the outer corona), including swamp layers to diminish perturbations before they reach the boundaries. Altogether, these methods enable more realistic 3D MHD simulations than previous models regarding the coronal heating problem above an AR - simply because of the ability to use a large amount of CPUs efficiently in parallel. Title: Thaddäus Derfflinger's Sunspot Observations during 1802-1824: A Primary Reference to Understand the Dalton Minimum Authors: Hayakawa, Hisashi; Besser, Bruno P.; Iju, Tomoya; Arlt, Rainer; Uneme, Shoma; Imada, Shinsuke; Bourdin, Philippe-A.; Kraml, Amand Bibcode: 2020ApJ...890...98H Altcode: 2020arXiv200102367H As we are heading toward the next solar cycle, presumably with a relatively small amplitude, it is of significant interest to reconstruct and describe the past secular minima on the basis of actual observations at the time. The Dalton Minimum is often considered one of the secular minima captured in the coverage of telescopic observations. Nevertheless, the reconstructions of the sunspot group number vary significantly, and the existing butterfly diagrams have a large data gap during the period. This is partially because most long-term observations at that time have remained unexplored in historical archives. Therefore, to improve our understanding on the Dalton Minimum, we have located two series of Thaddäus Derfflinger's observational records spanning 1802-1824 (a summary manuscript and logbooks), as well as his Brander's 5.5 feet azimuthal quadrant preserved in the Kremsmünster Observatory. We have revised the existing Derfflinger's sunspot group number with Waldmeier classification, and eliminated all the existing "spotless days" to remove contaminations from solar elevation observations. We have reconstructed the butterfly diagram on the basis of his observations and illustrated sunspot distributions in both solar hemispheres. Our article aims to revise the trend of Derfflinger's sunspot group number and to bridge a data gap of the existing butterfly diagrams around the Dalton Minimum. Our results confirm that the Dalton Minimum is significantly different from the Maunder Minimum, both in terms of cycle amplitudes and sunspot distributions. Therefore, the Dalton Minimum is more likely a secular minimum in the long-term solar activity, while further investigations for the observations at that time are required. Title: Orbital stability of ensembles of particles in regions of magnetic reconnection in Earth's magneto-tail Authors: Lhotka, Christoph; Bourdin, Philippe; Pilat-Lohinger, Elke Bibcode: 2019PhPl...26g2903L Altcode: 2019arXiv190713478L We investigate the collective behavior of particle orbits in the vicinity of magnetic reconnection in Earth's magneto-tail. Various regions of different kinds of orbital stability of particle motions are found. We locate regimes of temporary capture of particle orbits in configuration space as well as locations, where strong particle accelerations take place. With this study, we are able to provide a detailed map, i.e., the topology, of high and low acceleration centers close to the reconnection site. Quasiregular and chaotic kinds of motions of elementary particles can be determined as well. The orbital stability of particle orbits is obtained by a statistical analysis of the outcome of the system of variational equations of particle orbits within the framework of particle-in-cell simulations. Using the concept of Lyapunov characteristic numbers to ensembles of particle orbits, we introduce Lyapunov ensemble averages to describe the response of particle orbits to local perturbations induced by the electromagnetic field. Title: Application of the Electromotive Force as a Shock Front Indicator in the Inner Heliosphere Authors: Hofer, Bernhard; Bourdin, Philippe-A. Bibcode: 2019ApJ...878...30H Altcode: 2019arXiv190502596H The electromotive force (EMF) describes how the evolution and generation of a large-scale magnetic field is influenced by small-scale turbulence. Recent studies of in situ measurements have shown a significant peak in the EMF while a coronal mass ejection (CME) shock front passes by the spacecraft. The goal of this study is to use the EMF as an indicator for the arrival of CME shock fronts. With Helios spacecraft measurements we carry out a statistical study on the EMF during CMEs in the inner heliosphere. We develop an automated shock front detection algorithm using the EMF as the main detection criterion and compare the results to an existing CME database. The properties of the EMF during the recorded events are discussed as a function of the heliocentric distance. Our algorithm reproduces most of the events from Kilpua et al. and finds many additional CME-like events, which proves that the EMF is a good shock front indicator. The largest peaks in the EMF are found from 0 to 50 minutes after the initial shock. We find a power law of -1.54 and -2.18 for two different formulations of the EMF with the heliocentric distance. Title: Magnetic Helicity from Multipolar Regions on the Solar Surface Authors: Bourdin, Philippe-A.; Brandenburg, Axel Bibcode: 2018ApJ...869....3B Altcode: 2018arXiv180404160B The emergence of dipolar magnetic features on the solar surface is an idealization. Most of the magnetic flux emergence occurs in complex multipolar regions. Here, we show that the surface pattern of magnetic structures alone can reveal the sign of the underlying magnetic helicity in the nearly force-free coronal regions above. The sign of the magnetic helicity can be predicted to good accuracy by considering the three-dimensional position vectors of three spots on the sphere ordered by their relative strengths at the surface and compute from them the skew product. This product, which is a pseudoscalar, is shown to be a good proxy for the sign of the coronal magnetic helicity. Title: Magnetic Helicity Reversal in the Corona at Small Plasma Beta Authors: Bourdin, Philippe; Singh, Nishant K.; Brandenburg, Axel Bibcode: 2018ApJ...869....2B Altcode: 2018arXiv180404153B Solar and stellar dynamos shed small-scale and large-scale magnetic helicity of opposite signs. However, solar wind observations and simulations have shown that some distance above the dynamo both the small-scale and large-scale magnetic helicities have reversed signs. With realistic simulations of the solar corona above an active region now being available, we have access to the magnetic field and current density along coronal loops. We show that a sign reversal in the horizontal averages of the magnetic helicity occurs when the local maximum of the plasma beta drops below unity and the field becomes nearly fully force free. Hence, this reversal is expected to occur well within the solar corona and would not directly be accessible to in situ measurements with the Parker Solar Probe or SolarOrbiter. We also show that the reversal is associated with subtle changes in the relative dominance of structures with positive and negative magnetic helicity. Title: Electromotive force in the vincinity of an ICME shock front Authors: Bourdin, Philippe A. Bibcode: 2018shin.confE.202B Altcode: The electromotive force is a key quantity in magneto-hydrodynamic turbulence and dynamo research that couples magnetic field with plasma bulk flow fluctuations. From Helios observations it was thought that the electromotive force is negligible in the solar wind within the inner heliosphere between 0.3 and 1 AU. We revisit those data sets particularly around ICME and magnetic transient events. We compute the spatial derivatives along the solar-wind stream from in-situ measurements, which allows to determine quantities like the flow vorticity, the cross-helicity, and turbulent diffusion. With different formulations of the electromotive force from mean-field electrodynamics and turbulence research, we may compare the in-situ electromotive force with a simple ICME model of the magnetic field and the plasma bulk flow. We find the electromotive force becomes significantly enhanced and is no longer negligible during such magnetic transient events. Our toy-model fits well to the observed data and we may read several parameters, like the magnetic helicity and flow vorticity during this event. Hence, the electromotive force is not only a good in-situ indicator of ICME-like events, but also our method allows to draw conclusions on the actual internal magnetic structure of ICMEs. For future inner-heliospheric missions, like Parker Solar Probe and SolarOrbiter, this method may be applied to automatically detect and analyze ICMEs in at least a statistical sense. Title: Chaotic motions of plasma and dust particles in magnetic reconnection regimes in Earth's magnetotail Authors: Lhotka, Christoph; Pilat-Lohinger, Elke; Bourdin, Philippe Bibcode: 2018cosp...42E1985L Altcode: We investigate the role of regular and chaotic motions of plasma and dust particles in the regime of magnetic reconnection of the Earth magnetotail on plasma processes. Our study is based on numerical simulations of particle orbits in plasma simulations. We analyze the variational system of equations together with the evolution and characteristics of the short time Local Lyapunov Indicators. We find regular and chaotic motions of (dust) particle orbits in phase space and link our results to open problems of plasma physics. Title: Ensemble Prediction of a Halo Coronal Mass Ejection Using Heliospheric Imagers Authors: Amerstorfer, T.; Möstl, C.; Hess, P.; Temmer, M.; Mays, M. L.; Reiss, M. A.; Lowrance, P.; Bourdin, P. -A. Bibcode: 2018SpWea..16..784A Altcode: 2017arXiv171200218A The Solar TErrestrial RElations Observatory (STEREO) and its heliospheric imagers (HIs) have provided us the possibility to enhance our understanding of the interplanetary propagation of coronal mass ejections (CMEs). HI-based methods are able to forecast arrival times and speeds at any target and use the advantage of tracing a CME's path of propagation up to 1 AU and beyond. In our study, we use the ELEvoHI model for CME arrival prediction together with an ensemble approach to derive uncertainties in the modeled arrival time and impact speed. The CME from 3 November 2010 is analyzed by performing 339 model runs that are compared to in situ measurements from lined-up spacecraft MErcury Surface, Space ENvironment, GEochemistry, and Ranging and STEREO-B. Remote data from STEREO-B showed the CME as halo event, which is comparable to an HI observer situated at L1 and observing an Earth-directed CME. A promising and easy approach is found by using the frequency distributions of four ELEvoHI output parameters, drag parameter, background solar wind speed, initial distance, and speed. In this case study, the most frequent values of these outputs lead to the predictions with the smallest errors. Restricting the ensemble to those runs, we are able to reduce the mean absolute arrival time error from 3.5 ± 2.6 to 1.6 ± 1.1 hr at 1 AU. Our study suggests that L1 may provide a sufficient vantage point for an Earth-directed CME, when observed by HI, and that ensemble modeling could be a feasible approach to use ELEvoHI operationally. Title: Inner Structure of CME Shock Fronts Revealed by the Electromotive Force and Turbulent Transport Coefficients in Helios-2 Observations Authors: Bourdin, Philippe-A.; Hofer, Bernhard; Narita, Yasuhito Bibcode: 2018ApJ...855..111B Altcode: 2018arXiv180210111B Electromotive force is an essential quantity in dynamo theory. During a coronal mass ejection (CME), magnetic helicity gets decoupled from the Sun and advected into the heliosphere with the solar wind. Eventually, a heliospheric magnetic transient event might pass by a spacecraft, such as the Helios space observatories. Our aim is to investigate the electromotive force, the kinetic helicity effect (α term), the turbulent diffusion (β term), and the cross-helicity effect (γ term) in the inner heliosphere below 1 au. We set up a one-dimensional model of the solar wind velocity and magnetic field for a hypothetic interplanetary CME. Because turbulent structures within the solar wind evolve much slower than this structure needs to pass by the spacecraft, we use a reduced curl operator to compute the current density and vorticity. We test our CME shock-front model against an observed magnetic transient that passes by the Helios-2 spacecraft. At the peak of the fluctuations in this event we find strongly enhanced α, β, and γ terms, as well as a strong peak in the total electromotive force. Our method allows us to automatically identify magnetic transient events from any in situ spacecraft observations that contain magnetic field and plasma velocity data of the solar wind. Title: Catalog of fine-structured electron velocity distribution functions - Part 1: Antiparallel magnetic-field reconnection (Geospace Environmental Modeling case) Authors: Bourdin, Philippe-A. Bibcode: 2017AnGeo..35.1051B Altcode: 2017arXiv170905564B To understand the essential physics needed to reproduce magnetic reconnection events in 2.5-D particle-in-cell (PIC) simulations, we revisit the Geospace Environmental Modeling (GEM) setup. We set up a 2-D Harris current sheet (that also specifies the initial conditions) to evolve the reconnection of antiparallel magnetic fields. In contrast to the GEM setup, we use a much smaller initial perturbation to trigger the reconnection and evolve it more self-consistently. From PIC simulation data with high-quality particle statistics, we study a symmetric reconnection site, including separatrix layers, as well as the inflow and the outflow regions. The velocity distribution functions (VDFs) of electrons have a fine structure and vary strongly depending on their location within the reconnection setup. The goal is to start cataloging multidimensional fine-structured electron velocity distributions showing different reconnection processes in the Earth's magnetotail under various conditions. This will enable a direct comparison with observations from, e.g., the NASA Magnetospheric MultiScale (MMS) mission, to identify reconnection-related events. We find regions with strong non-gyrotropy also near the separatrix layer and provide a refined criterion to identify an electron diffusion region in the magnetotail. The good statistical significance of this work for relatively small analysis areas reveals the gradual changes within the fine structure of electron VDFs depending on their sampling site. Title: Solar wind driven instability with non-Maxwellian distribution functions Authors: Ehsan, Z.; Poedts, S.; Vranjes, J.; Arshad, K.; Shah, H. A.; Bourdin, P. A. Bibcode: 2016AGUFMSH21D2558E Altcode: In plasmas with an electron drift current relative to static ions, ion acoustic waves are subject to the kinetic instability. The instability threshold however, when one quasi-neutral electron-ion plasma propagates through another static target plasma, may be well below the ion acoustic speed of the static plasma. Such a currentless instability may frequently be driven by the solar wind when it permeates through another plasma in space. Such kinetic instabilities were previously studied in the framework of thermodynamically stable plasmas obeying a Maxwellian behavior. Recently, it has become possible to construct the distribution function from the empirical data, which is found to deviate from the Maxwellian due to the presence of high energy tails and shoulders in the profile of the distribution functions. Here we study a situation where non-Maxwellian (Lorentzian or kappa) solar wind plasma interacts with another relatively slow plasma, and then excites a kinetic instability in the acoustic mode. As a special case, we also discuss the presence of interstellar dust and discuss dispersion properties and growth rates of ion/dust acoustic modes quantitatively. Title: Firedrakeproject/Petsc: Portable, Extensible Toolkit For Scientific Computation Authors: Smith, Barry; Balay, Satish; Knepley, Matthew; Brown, Jed; Curfman McInnes, Lois; Zhang, Hong; Brune, Peter; Sarich, Jason; tisaac; stefanozampini; Dalcin, Lisandro; Karpeyev, Dmitry; markadams; Minden, Victor; VictorEijkhout; vijaysm; Rupp, Karl; dmay23; Kong, Fande; SurtaiHan; Lange, Michael; tmunson; Meiser, Dominic; Sanan, Patrick; emconsta; Zhou, Xuan; baagaard-usgs; Mitchell, Lawrence; bourdin; sozmen Bibcode: 2016zndo....161513S Altcode: Version of Firedrake used in 'Vertical slice modelling of nonlinear Eady waves using a compatible finite element method'. This release is specifically created to document the version of Firedrake used in a particular set of experiments. Please do not cite this as a general source for Firedrake or any of its dependencies. Instead, refer to http://www.firedrakeproject.org/publications.html Title: Stable motions of charged dust grains subject to solar wind, Poynting-Robertson drag, and the mean interplanetary magnetic field Authors: Lhotka, Christoph; Bourdin, Philippe; Narita, Yasuhito Bibcode: 2016DPS....4852101L Altcode: We investigate the combined effect of solar wind, Poynting-Robertson drag, and the frozen-in interplanetary magnetic field on the motion of charged dust grains in our solar system. It is generally accepted that the combined effects of solar wind and photon absorption and re-emmision (Poynting-Robertson drag) lead to a decrease in semi-major axis on secular time scales. On the contrary, we demonstrate that the interplanetary magnetic field may counteract these drag forces under certain circumstances. We derive a simple relation between the parameters of the magnetic field, the physical properties of the dust grain as well as the shape and orientation of the orbital ellipse of the particle, which is a necessary conditions for the stabilization in semi-major axis. Title: Firedrakeproject/Petsc: Portable, Extensible Toolkit For Scientific Computation Authors: Smith, Barry; Balay, Satish; Knepley, Matthew; Brown, Jed; Curfman McInnes, Lois; Zhang, Hong; Brune, Peter; sarich; tisaac; stefanozampini; Dalcin, Lisandro; Karpeyev, Dmitry; markadams; Minden, Victor; VictorEijkhout; vijaysm; Rupp, Karl; dmay23; Kong, Fande; SurtaiHan; Lange, Michael; Meiser, Dominic; emconsta; Sanan, Patrick; Zhou, Xuan; baagaard; Mitchell, Lawrence; tmunson; sozmen; bourdin Bibcode: 2016zndo....153972S Altcode: Version of Firedrake used in 'High level implementation of geometric multigrid solvers for finite element problems: applications in atmospheric modelling' This release is specifically created to document the version of Firedrake used in a particular set of experiments. Please do not cite this as a general source for Firedrake or any of its dependencies. Instead, refer to http://www.firedrakeproject.org/publications.html Title: Charged Dust Grain Dynamics Subject to Solar Wind, Poynting-Robertson Drag, and the Interplanetary Magnetic Field Authors: Lhotka, Christoph; Bourdin, Philippe; Narita, Yasuhito Bibcode: 2016ApJ...828...10L Altcode: 2016arXiv160807040L We investigate the combined effect of solar wind, Poynting-Robertson drag, and the frozen-in interplanetary magnetic field on the motion of charged dust grains in our solar system. For this reason, we derive a secular theory of motion by the means of an averaging method and validate it with numerical simulations of the unaveraged equations of motions. The theory predicts that the secular motion of charged particles is mainly affected by the z-component of the solar magnetic axis, or the normal component of the interplanetary magnetic field. The normal component of the interplanetary magnetic field leads to an increase or decrease of semimajor axis depending on its functional form and sign of charge of the dust grain. It is generally accepted that the combined effects of solar wind and photon absorption and re-emmision (Poynting-Robertson drag) lead to a decrease in semimajor axis on secular timescales. On the contrary, we demonstrate that the interplanetary magnetic field may counteract these drag forces under certain circumstances. We derive a simple relation between the parameters of the magnetic field, the physical properties of the dust grain, as well as the shape and orientation of the orbital ellipse of the particle, which is a necessary conditions for the stabilization in semimajor axis. Title: Effects from switching on PIC simulations: Geospace Environmental Modeling (GEM) reconnection setup revisited Authors: Bourdin, P. A.; Nakamura, T.; Narita, Y. Bibcode: 2015AGUFMSH43A2438B Altcode: Electromagnetic Parcile-In-Cell (PIC) simulations are widely used to study plasma phenomena where kinetic scales are coupled to fluid scales. One of these phenomena is the evolution of magnetic reconnection. Switch-on effects have been described earlier for magneto-/hydrodynamic (MHD and HD) simulations, where oscillations are ignited by the initial condition and the usual instantaneous way of starting a simulation run. Here we revisit the GEM setup (a Harris current sheet) and demonstrate the immediate generation of oscillations propagating perpendicular to the magnetic shear layer (in Bz). Also we show how these oscillations do not dissipate quickly and will later be mode-converted to generate wave power, first in By, much later also in Bx (pointing along the shear direction). One needs to take care not to interpret these oscillations as physical wave modes associated with the nature of reconnection. We propose a method to prevent such switch-on effects from the beginning, that should be considered for implementation in other PIC simulation codes as well. Title: Rising coronal loops in a 3D-MHD model and the time evolution of the magnetic topology of a solar active region Authors: Bourdin, Philippe A. Bibcode: 2015IAUGA..2257253B Altcode: Magnetic flux emergence from the photosphere into the solar atmosphere has been observed to drive a magnetic field reconfiguration in the corona, eventually resulting in plasma outbreaks. Currently it is under discussion, at which rate this reconnection may happen and how the magnetic energy is released, e.g. in short-lived intermittent heating events (nanoflares) or in a more quasi-static diffusive manner leading to persistent electric currents to be dissipated in the corona. To address this question, we use the results of an observationally driven 3D-MHD model in order to study the time-evolution of the magnetic field, that is otherwise inaccessible to observations. The model features some EUV-bright coronal loops system that was observed to have similar plasma flow dynamics along these loops. We find that typically such loops are rising with a speed of about 2 km/s, which is consistent with earlier studies of loops just entering the corona at its base. We will demonstrate the influence on plasma flows along the loops due to their rise. A statistical Doppler-shift analysis reveals that in the typical case, such loops not only rise through the atmosphere, but also often are asymmetrically heated. Due to the match to observations, we conclude that the magnetic energy dissipation process we model, which is Ohmic dissipation of currents that are induced by a field-line braiding process in the photosphere, is sufficient to explain the magnetic reconfiguration process in the corona and yields to realistic reconnection rates on scales of about 250 km. Title: Signal-noise separation based on self-similarity testing in 1D-timeseries data Authors: Bourdin, Philippe A. Bibcode: 2015IAUGA..2257225B Altcode: The continuous improvement of the resolution delivered by modern instrumentation is a cost-intensive part of any new space- or ground-based observatory. Typically, scientists later reduce the resolution of the obtained raw-data, for example in the spatial, spectral, or temporal domain, in order to suppress the effects of noise in the measurements. In practice, only simple methods are used that just smear out the noise, instead of trying to remove it, so that the noise can nomore be seen. In high-precision 1D-timeseries data, this usually results in an unwanted quality-loss and corruption of power spectra at selected frequency ranges. Novel methods exist that are based on non-local averaging, which would conserve much of the initial resolution, but these methods are so far focusing on 2D or 3D data. We present here a method specialized for 1D-timeseries, e.g. as obtained by magnetic field measurements from the recently launched MMS satellites. To identify the noise, we use a self-similarity testing and non-local averaging method in order to separate different types of noise and signals, like the instrument noise, non-correlated fluctuations in the signal from heliospheric sources, and correlated fluctuations such as harmonic waves or shock fronts. In power spectra of test data, we are able to restore significant parts of a previously know signal from a noisy measurement. This method also works for high frequencies, where the background noise may have a larger contribution to the spectral power than the signal itself. We offer an easy-to-use software tools set, which enables scientists to use this novel technique on their own noisy data. This allows to use the maximum possible capacity of the instrumental hardware and helps to enhance the quality of the obtained scientific results. Title: Coronal and transition-region Doppler shifts of an active region 3D-MHD model as indicator for the magnetic activity cycle of solar-like stars Authors: Bourdin, Philippe A. Bibcode: 2015IAUGA..2257021B Altcode: For the Sun and solar-like stars, Doppler blueshifts are observed in the hot corona, while in average redshifts are seen in the cooler transition region layer below the corona. This clearly contradicts the idea of a continuous flow-equilibrium starting from a star's atmosphere and forming the stellar wind. To explain this, we implement a 3D-MHD model of the solar corona above an observed active region and use an atomic database to obtain the emission from the million Kelvin hot plasma. The generated EUV-bright loops system from the model compares well to the observed coronal loops. Therefore, we have access to realistic plasma parameters, including the flow dynamics within the active region core, and can derive total spectra as if we look the Sun as a star. We compare the model spectra to actual statistical observations of the Sun taken at different magnetic activity levels. We find characteristic Doppler-shift statistics that can be used to identify the magnetic activity state of the Sun and solar-like stars. This should help to model the variability of such stars by inferring their activity level from total spectra of coronal and transition-region emission lines. Title: Coronal loops above an active region: Observation versus model Authors: Bourdin, Philippe-A.; Bingert, Sven; Peter, Hardi Bibcode: 2014PASJ...66S...7B Altcode: 2014PASJ..tmp..113B; 2014arXiv1410.1216B We conducted a high-resolution numerical simulation of the solar corona above a stable active region. The aim is to test the field line braiding mechanism for a sufficient coronal energy input. We also check the applicability of scaling laws for coronal loop properties like the temperature and density. Our 3D MHD model is driven from below by Hinode observations of the photosphere, in particular a high-cadence time series of line-of-sight magnetograms and horizontal velocities derived from the magnetograms. This driving applies stress to the magnetic field and thereby delivers magnetic energy into the corona, where currents are induced that heat the coronal plasma by Ohmic dissipation. We compute synthetic coronal emission that we directly compare to coronal observations of the same active region taken by Hinode. In the model, coronal loops form at the same places as they are found in coronal observations. Even the shapes of the synthetic loops in 3D space match those found from a stereoscopic reconstruction based on STEREO spacecraft data. Some loops turn out to be slightly over-dense in the model, as expected from observations. This shows that the spatial and temporal distribution of the Ohmic heating produces the structure and dynamics of a coronal loops system close to what is found in observations. Title: Standard 1D solar atmosphere as initial condition for MHD simulations and switch-on effects Authors: Bourdin, P. -A. Bibcode: 2014CEAB...38....1B Altcode: 2015arXiv150701218B Many applications in Solar physics need a 1D atmospheric model as initial condition or as reference for inversions of observational data. The VAL atmospheric models are based on observations and are widely used since decades. Complementary to that, the FAL models implement radiative hydrodynamics and showed the shortcomings of the VAL models since almost equally long time. In this work, we present a new 1D layered atmosphere that spans not only from the photosphere to the transition region, but from the solar interior up to far in the corona. We also discuss typical mistakes that are done when switching on simulations based on such an initial condition and show how the initial condition can be equilibrated so that a simulation can start smoothly. The 1D atmosphere we present here served well as initial condition for HD and MHD simulations and should also be considered as reference data for solving inverse problems. Title: VizieR Online Data Catalog: 3D-MHD model of a solar active region corona (Bourdin+, 2013) Authors: Bourdin, P. -A.; Bingert, S.; Peter, H. Bibcode: 2013yCat..35550123B Altcode: 2013yCat..35559123B Parameter and setup files used for a 3D-MHD simulation with the Pencil Code. The parameters are needed to reproduce the simulation, while the setup files show which modules of the Pencil Code were used to conduct the simulation.

The parameters file are in the state as used at the end of the simulation, when the analysis was performed. With the logfile, one can reconstruct the state at any time during the simulation run (this applies to "run.in").

The code revision logfile indicates which code revision was used when, where only changes in the configuration are listed together with the full initial and final configuration.

All *.in files are in Fortran Namelist format. The *.in and *.local files are all ready to be used with Pencil Code. The Pencil Code can be obtained at: http://pencil-code.nordita.org/

(7 data files). Title: Coronal structure and dynamics above an active region - MHD model versus observation Authors: Bourdin, Philippe-A.; Bingert, Sven; Peter, Hardi Bibcode: 2013enss.confE..56B Altcode: We present a one-to-one comparison between an observed active region and a 3D MHD model including spectral synthesis. We set up the 3D MHD model from the photosphere to the corona and use the actually observed photospheric magnetograms and horizontal motions as a lower boundary condition to drive the 3D coronal model. Following Parker's model for field-line braiding this induces currents that are dissipated and heat the corona. From the 3D MHD model we synthesize emission spectra in EUV and X-rays that can be compared directly to the Hinode/EIS and XRT observation of the active region we model. We find that the hot coronal loops that form in the model occur at just the same places as they are found in the actual observations. Moreover, their spatial structure and the flows along the loops as seen in the synthesized intensity and Doppler maps compare well to the actual observations. By this we present the first coronal model driven by photospheric observations that provides a one-to-one match to the coronal structure and dynamics observed for that same active region. This shows that the distribution of the energy input in time and space through the field-line braiding is close to the real solar coronal energy deposition. Title: Observationally driven 3D MHD model of the solar corona above a magnetically active region Authors: Bourdin, Philippe-André Bibcode: 2013PhDT.......560B Altcode: No abstract at ADS