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Author name code: botha
ADS astronomy entries on 2022-09-14
author:"Botha, Gert J.J." 

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Title: The Independence of Oscillatory Reconnection Periodicity from
    the Initial Pulse
Authors: Karampelas, Konstantinos; McLaughlin, James A.; Botha,
   Gert J. J.; Régnier, Stéphane
2022ApJ...933..142K    Altcode: 2022arXiv220701980K
  Oscillatory reconnection can manifest through the interaction between
  the ubiquitous MHD waves and omnipresent null points in the solar
  atmosphere and is characterized by an inherent periodicity. In the
  current study, we focus on the relationship between the period
  of oscillatory reconnection and the strength of the wave pulse
  initially perturbing the null point, in a hot coronal plasma. We
  use the PLUTO code to solve the fully compressive, resistive MHD
  equations for a 2D magnetic X-point. Using wave pulses with a wide
  range of amplitudes, we perform a parameter study to obtain values
  for the period, considering the presence and absence of anisotropic
  thermal conduction separately. In both cases, we find that the
  resulting period is independent of the strength of the initial
  perturbation. The addition of anisotropic thermal conduction only
  leads to an increase in the mean value for the period, in agreement
  with our previous study. We also consider a different type of initial
  driver and we obtain an oscillation period matching the independent
  trend previously mentioned. Thus, we report for the first time on
  the independence between the type and strength of the initializing
  wave pulse and the resulting period of oscillatory reconnection in a
  hot coronal plasma. This makes oscillatory reconnection a promising
  mechanism to be used within the context of coronal seismology.

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Title: Oscillatory Reconnection of a 2D X-point in a hot coronal
    plasma
Authors: Karampelas, Konstantinos; Botha, Gert J. J.; Regnier,
   Stephane; Mclaughlin, James A.
2022cosp...44.2559K    Altcode:
  Oscillatory reconnection (a relaxation mechanism with periodic changes
  in connectivity) has been proposed as a potential physical mechanism
  underpinning several periodic phenomena in the solar atmosphere
  including, but not limited to, quasi-periodic pulsations (QPPs)
  and flows. In the past, this mechanism had been extensively studied
  numerically for 2D and 3D simulations of null points in cold plasma. In
  our latest studies, we have expanded our understanding of oscillatory
  reconnection, by considering for the first time hot, coronal plasma. We
  will be presenting our latest results, from numerically solving the
  fully-compressive, resistive MHD equations for a 2D magnetic X-point
  under coronal conditions using the PLUTO code. We report on the
  resulting oscillatory reconnection including its periodicity and decay
  rate, by tracking the evolution of the current density profile at the
  null point. We also consider, for the first time, the effect of adding
  anisotropic thermal conduction to the mechanism, and how it simplifies
  the spectrum of the oscillation profile and increases its decay rate,
  while still allowing the mechanism to manifest. Finally, we reveal how
  the equilibrium magnetic field strength, density distribution and the
  amplitude of the initial perturbation relate to the decay rate, and
  period of oscillatory reconnection, opening the tantalising possibility
  of utilizing oscillatory reconnection as a seismological tool.

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Title: Using Oscillatory Reconnection of a 2D X-point as a tool for
    coronal seismology.
Authors: Karampelas, Konstantinos; Botha, Gert J. J.; Regnier,
   Stephane; Mclaughlin, James A.
2022cosp...44.2487K    Altcode:
  The mechanism of oscillatory reconnection of a null point has been
  one of the proposed mechanisms behind phenomena like quasi-periodic
  pulsations (QPPs). The manifestation of this mechanism through the
  interaction of the ubiquitous waves with null points in the solar
  atmosphere opens the possibility of utilizing oscillatory reconnection
  as a tool for coronal seismology. In the past, the first steps had
  been taken, by connecting the length of the initial current sheet
  with the period of oscillatory reconnection, and by identifying a
  linear regime where the period is affected by resistivity. Our recent
  numerical studies have expanded upon these findings, by considering
  plasma at coronal conditions, with the addition of anisotropic
  thermal conduction. We have performed a series of parameter studies
  with the use of the PLUTO code, which reveal a relation between the
  equilibrium magnetic field strength and density distribution with
  the period and decay rate of oscillatory reconnection. In addition,
  we see an independence of the oscillation period from the type and
  strength of the external wave pulse, which perturbs the null from its
  initial equilibrium state. This allows us to formulate an empirical
  formula connecting these four quantities, opening the way in using
  oscillatory reconnection for coronal seismology.

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Title: Oscillatory Reconnection of a 2D X-point in a Hot Coronal
    Plasma
Authors: Karampelas, Konstantinos; McLaughlin, James A.; Botha,
   Gert J. J.; Régnier, Stéphane
2022ApJ...925..195K    Altcode: 2021arXiv211205712K
  Oscillatory reconnection (a relaxation mechanism with periodic changes
  in connectivity) has been proposed as a potential physical mechanism
  underpinning several periodic phenomena in the solar atmosphere,
  including, but not limited to, quasi-periodic pulsations (QPPs). Despite
  its importance, however, the mechanism has never been studied within
  a hot, coronal plasma. We investigate oscillatory reconnection in a
  one million Kelvin plasma by solving the fully-compressive, resistive
  MHD equations for a 2D magnetic X-point under coronal conditions using
  the PLUTO code. We report on the resulting oscillatory reconnection
  including its periodicity and decay rate. We observe a more complicated
  oscillating profile for the current density compared to that found for
  a cold plasma, due to mode-conversion at the equipartition layer. We
  also consider, for the first time, the effect of adding anisotropic
  thermal conduction to the oscillatory reconnection mechanism, and
  we find this simplifies the spectrum of the oscillation profile
  and increases the decay rate. Crucially, the addition of thermal
  conduction does not prevent the oscillatory reconnection mechanism
  from manifesting. Finally, we reveal a relationship between the
  equilibrium magnetic field strength, decay rate, and period of
  oscillatory reconnection, which opens the tantalising possibility of
  utilizing oscillatory reconnection as a seismological tool.

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Title: Observing solar wind turbulence in the corona with ground-based
    radio telescopes
Authors: Toit Strauss, Du; Botha, Gert; Chibueze, James; Kontar,
   Eduard; Engelbrecht, Eugene; Lotz, Stefan; Wicks, Robert; Krupar,
   Vratislav; Bale, Stuart; Maharaj, Shimul; Jeffrey, Natasha; Nel,
   Amore; Steyn, Ruhann; van den Berg, Jabus
2021EGUGA..2314180T    Altcode:
  When point-like galactic and extragalactic radio sources are observed
  through the solar corona by ground-based radio telescopes, plasma
  density fluctuations in the turbulent solar wind scatter these photons,
  leading to an observed broadening and/or elongation of such sources. By
  observing this broadening for several sources, over several days, we
  can get information about e.g. the wavenumber and radial dependence
  of solar wind density fluctuations at very small scales (~30m - 8km)
  inside the Alfven radius, thereby capturing details of the turbulence
  dissipation range. Here, we present very initial results of such a
  study with the MeerKAT radio telescope in South Africa (being, of
  course, a precursor to the much larger Square Kilometer Array, SKA),
  discuss the preliminary results, and compare these with theoretical
  estimates and previous observations.

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Title: A chromospheric resonance cavity in a sunspot mapped with
    seismology
Authors: Jess, David B.; Snow, Ben; Houston, Scott J.; Botha, Gert
   J. J.; Fleck, Bernhard; Krishna Prasad, S.; Asensio Ramos, Andrés;
   Morton, Richard J.; Keys, Peter H.; Jafarzadeh, Shahin; Stangalini,
   Marco; Grant, Samuel D. T.; Christian, Damian J.
2020NatAs...4..220J    Altcode: 2019NatAs...4..220J; 2019NatAs.tmp..502J
  Sunspots are intense collections of magnetic fields that pierce through
  the Sun's photosphere, with their signatures extending upwards into the
  outermost extremities of the solar corona<SUP>1</SUP>. Cutting-edge
  observations and simulations are providing insights into the
  underlying wave generation<SUP>2</SUP>, configuration<SUP>3,4</SUP> and
  damping<SUP>5</SUP> mechanisms found in sunspot atmospheres. However,
  the in situ amplification of magnetohydrodynamic waves<SUP>6</SUP>,
  rising from a few hundreds of metres per second in the photosphere to
  several kilometres per second in the chromosphere<SUP>7</SUP>, has,
  until now, proved difficult to explain. Theory predicts that the
  enhanced umbral wave power found at chromospheric heights may come
  from the existence of an acoustic resonator<SUP>8-10</SUP>, which
  is created due to the substantial temperature gradients experienced
  at photospheric and transition region heights<SUP>11</SUP>. Here,
  we provide strong observational evidence of a resonance cavity
  existing above a highly magnetic sunspot. Through a combination of
  spectropolarimetric inversions and comparisons with high-resolution
  numerical simulations, we provide a new seismological approach to
  mapping the geometry of the inherent temperature stratifications across
  the diameter of the underlying sunspot, with the upper boundaries of the
  chromosphere ranging between 1,300 ± 200 km and 2,300 ± 250 km. Our
  findings will allow the three-dimensional structure of solar active
  regions to be conclusively determined from relatively commonplace
  two-dimensional Fourier power spectra. The techniques presented are
  also readily suitable for investigating temperature-dependent resonance
  effects in other areas of astrophysics, including the examination of
  Earth-ionosphere wave cavities<SUP>12</SUP>.

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Title: 3D WKB solution for fast magnetoacoustic wave behaviour within
    a separatrix dome containing a coronal null point
Authors: McLaughlin, James A.; Thurgood, Jonathan O.; Botha, Gert
   J. J.; Wiggs, Joshua A.
2019MNRAS.484.1390M    Altcode: 2019MNRAS.tmp..133M
  The propagation of the fast magnetoacoustic wave is studied within a
  magnetic topology containing a 3D coronal null point whose fan field
  lines form a dome. The topology is constructed from a magnetic dipole
  embedded within a global uniform field. This study aims to improve the
  understanding of how magnetohydrodynamics (MHD) waves propagate through
  inhomogeneous media, specifically in a medium containing an isolated 3D
  magnetic null point. We consider the linearized MHD equations for an
  inhomogeneous, ideal, cold plasma. The equations are solved utilizing
  the WKB approximation and Charpit's Method. We find that for a planar
  fast wave generated below the null point, the resultant propagation is
  strongly dependent upon initial location and that there are two main
  behaviours: the majority of the wave escapes the null (experiencing
  different severities of refraction depending upon the interplay with the
  equilibrium Alfvén-speed profile) or, alternatively, part of the wave
  is captured by the coronal null point (for elements generated within
  a specific critical radius about the spine and on the z = 0 plane). We
  also generalize the magnetic topology and find that the height of the
  null determines the amount of wave that is captured. We conclude that
  for a wavefront generated below the null point, nulls at a greater
  height can trap proportionally less of the corresponding wave energy.

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Title: Predictions of DKIST/DL-NIRSP Observations for an Off-limb
    Kink-unstable Coronal Loop
Authors: Snow, B.; Botha, G. J. J.; Scullion, E.; McLaughlin, J. A.;
   Young, P. R.; Jaeggli, S. A.
2018ApJ...863..172S    Altcode: 2018arXiv180704972S
  Synthetic intensity maps are generated from a 3D kink-unstable flux
  rope simulation using several DKIST/DL-NIRSP spectral lines to make
  a prediction of the observational signatures of energy transport and
  release. The reconstructed large field-of-view intensity mosaics and
  single tile sit-and-stare high-cadence image sequences show detailed,
  fine-scale structure and exhibit signatures of wave propagation,
  redistribution of heat, flows, and fine-scale bursts. These fine-scale
  bursts are present in the synthetic Doppler velocity maps and can be
  interpreted as evidence for small-scale magnetic reconnection at the
  loop boundary. The spectral lines reveal the different thermodynamic
  structures of the loop, with the hotter lines showing the loop
  interior and braiding and the cooler lines showing the radial edges
  of the loop. The synthetic observations of DL-NIRSP are found to
  preserve the radial expansion, and hence the loop radius can be
  measured accurately. The electron number density can be estimated
  using the intensity ratio of the Fe XIII lines at 10747 and 10798
  Å. The estimated density from this ratio is correct to within ±10%
  during the later phases of the evolution; however, it is less accurate
  initially when line-of-sight density inhomogeneities contribute to the
  Fe XIII intensity, resulting in an overprediction of the density by
  ≈30%. The identified signatures are all above a conservative estimate
  for instrument noise and therefore will be detectable. In summary, we
  have used forward modeling to demonstrate that the coronal off-limb
  mode of DKIST/DL-NIRSP will be able to detect multiple independent
  signatures of a kink-unstable loop and observe small-scale transient
  features including loop braiding/twisting and small-scale reconnection
  events occurring at the radial edge of the loop.

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Title: Onset of 2D magnetic reconnection in the solar photosphere,
    chromosphere, and corona
Authors: Snow, B.; Botha, G. J. J.; McLaughlin, J. A.; Hillier, A.
2018A&A...609A.100S    Altcode: 2017arXiv171100683S
  <BR /> Aims: We aim to investigate the onset of 2D time-dependent
  magnetic reconnection that is triggered using an external (non-local)
  velocity driver located away from, and perpendicular to, an
  equilibrium Harris current sheet. Previous studies have typically
  utilised an internal trigger to initiate reconnection, for example
  initial conditions centred on the current sheet. Here, an external
  driver allows for a more naturalistic trigger as well as the study
  of the earlier stages of the reconnection start-up process. <BR />
  Methods: Numerical simulations solving the compressible, resistive
  magnetohydrodynamic (MHD) equations were performed to investigate the
  reconnection onset within different atmospheric layers of the Sun,
  namely the corona, chromosphere and photosphere. <BR /> Results: A
  reconnecting state is reached for all atmospheric heights considered,
  with the dominant physics being highly dependent on atmospheric
  conditions. The coronal case achieves a sharp rise in electric field
  (indicative of reconnection) for a range of velocity drivers. For the
  chromosphere, we find a larger velocity amplitude is required to trigger
  reconnection (compared to the corona). For the photospheric environment,
  the electric field is highly dependent on the inflow speed; a sharp
  increase in electric field is obtained only as the velocity entering
  the reconnection region approaches the Alfvén speed. Additionally,
  the role of ambipolar diffusion is investigated for the chromospheric
  case and we find that the ambipolar diffusion alters the structure
  of the current density in the inflow region. <BR /> Conclusions: The
  rate at which flux enters the reconnection region is controlled by
  the inflow velocity. This determines all aspects of the reconnection
  start-up process, that is, the early onset of reconnection is dominated
  by the advection term in Ohm's law in all atmospheric layers. A lower
  plasma-β enhances reconnection and creates a large change in the
  electric field. A high plasma-β hinders the reconnection, yielding a
  sharp rise in the electric field only when the velocity flowing into
  the reconnection region approaches the local Alfvén speed.

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Title: Observational Signatures of a Kink-unstable Coronal Flux Rope
    Using Hinode/EIS
Authors: Snow, B.; Botha, G. J. J.; Régnier, S.; Morton, R. J.;
   Verwichte, E.; Young, P. R.
2017ApJ...842...16S    Altcode: 2017arXiv170505114S
  The signatures of energy release and energy transport for a
  kink-unstable coronal flux rope are investigated via forward
  modeling. Synthetic intensity and Doppler maps are generated from
  a 3D numerical simulation. The CHIANTI database is used to compute
  intensities for three Hinode/EIS emission lines that cover the
  thermal range of the loop. The intensities and Doppler velocities at
  simulation-resolution are spatially degraded to the Hinode/EIS pixel
  size (1″), convolved using a Gaussian point-spread function (3″),
  and exposed for a characteristic time of 50 s. The synthetic images
  generated for rasters (moving slit) and sit-and-stare (stationary
  slit) are analyzed to find the signatures of the twisted flux and the
  associated instability. We find that there are several qualities of a
  kink-unstable coronal flux rope that can be detected observationally
  using Hinode/EIS, namely the growth of the loop radius, the increase in
  intensity toward the radial edge of the loop, and the Doppler velocity
  following an internal twisted magnetic field line. However, EIS cannot
  resolve the small, transient features present in the simulation,
  such as sites of small-scale reconnection (e.g., nanoflares).

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Title: 3D WKB solution for fast magnetoacoustic wave behaviour around
    an X-line
Authors: McLaughlin, J. A.; Botha, G. J. J.; Régnier, S.; Spoors,
   D. L.
2016A&A...591A.103M    Altcode: 2016arXiv160702379M
  Context. We study the propagation of a fast magnetoacoustic wave in
  a 3D magnetic field created from two magnetic dipoles. The magnetic
  topology contains an X-line. <BR /> Aims: We aim to contribute to the
  overall understanding of MHD wave propagation within inhomogeneous
  media, specifically around X-lines. <BR /> Methods: We investigate the
  linearised, 3D MHD equations under the assumptions of ideal and cold
  plasma. We utilise the WKB approximation and Charpit's method during
  our investigation. <BR /> Results: It is found that the behaviour
  of the fast magnetoacoustic wave is entirely dictated by the local,
  inhomogeneous, equilibrium Alfvén speed profile. All parts of the
  wave experience refraction during propagation, where the magnitude of
  the refraction effect depends on the location of an individual wave
  element within the inhomogeneous magnetic field. The X-line, along
  which the Alfvén speed is identically zero, acts as a focus for the
  refraction effect. There are two main types of wave behaviour: part
  of the wave is either trapped by the X-line or escapes the system, and
  there exists a critical starting region around the X-line that divides
  these two types of behaviour. For the set-up investigated, it is found
  that 15.5% of the fast wave energy is trapped by the X-line. <BR />
  Conclusions: We conclude that linear, β = 0 fast magnetoacoustic waves
  can accumulate along X-lines and thus these will be specific locations
  of fast wave energy deposition and thus preferential heating. The work
  here highlights the importance of understanding the magnetic topology
  of a system. We also demonstrate how the 3D WKB technique described
  in this paper can be applied to other magnetic configurations.

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Title: Chromospheric seismology above sunspot umbrae
Authors: Snow, B.; Botha, G. J. J.; Régnier, S.
2015A&A...580A.107S    Altcode: 2015arXiv150707371S
  Context. The acoustic resonator is an important model for explaining
  the three-minute oscillations in the chromosphere above sunspot
  umbrae. The steep temperature gradients at the photosphere and
  transition region provide the cavity for the acoustic resonator,
  which allows waves to be both partially transmitted and partially
  reflected. <BR /> Aims: In this paper, a new method of estimating
  the size and temperature profile of the chromospheric cavity above a
  sunspot umbra is developed. <BR /> Methods: The magnetic field above
  umbrae is modelled numerically in 1.5D with slow magnetoacoustic
  wave trains travelling along magnetic fieldlines. Resonances are
  driven by applying the random noise of three different colours -
  white, pink, and brown - as small velocity perturbations to the upper
  convection zone. Energy escapes the resonating cavity and generates
  wave trains moving into the corona. Line-of-sight integration is also
  performed to determine the observable spectra through SDO/AIA. <BR />
  Results: The numerical results show that the gradient of the coronal
  spectra is directly correlated with the chromosperic temperature
  configuration. As the chromospheric cavity size increases, the
  spectral gradient becomes shallower. When line-of-sight integration
  is performed, the resulting spectra demonstrate a broadband of excited
  frequencies that is correlated with the chromospheric cavity size. The
  broadband of excited frequencies becomes narrower as the chromospheric
  cavity size increases. <BR /> Conclusions: These two results provide
  a potentially useful diagnostic for the chromospheric temperature
  profile by considering coronal velocity oscillations.

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Title: Simulation of the observed coronal kink instability and its
    implications for the SDO/AIA
Authors: Srivastava, A. K.; Botha, G. J. J.; Arber, T. D.; Kayshap, P.
2013AdSpR..52...15S    Altcode: 2013arXiv1301.2927S
  Srivastava et al. (2010) have observed a highly twisted coronal loop,
  which was anchored in AR10960 during the period 04:43 UT-04:52 UT on
  4 June 2007. The loop length and radius are approximately 80 Mm and 4
  Mm, with a twist of 11.5 π. These observations are used as initial
  conditions in a three dimensional nonlinear magnetohydrodynamic
  simulation with parallel thermal conduction included. The initial
  unstable equilibrium evolves into the kink instability, from which
  synthetic observables are generated for various high-temperature
  filters of SDO/AIA. These observables include temporal and spatial
  averaging to account for the resolution and exposure times of SDO/AIA
  images. Using the simulation results, we describe the implications of
  coronal kink instability as observables in SDO/AIA filters.

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Title: Formation of magnetic flux tubes in cylindrical wedge geometry
Authors: Botha, G. J. J.; Rucklidge, A. M.; Hurlburt, N. E.
2012GApFD.106..701B    Altcode:
  Three-dimensional (3D) MHD numerical simulations have not been able to
  demonstrate convincingly the spontaneous formation of large vertical
  flux tubes. Two-dimensional (2D) magnetoconvection in axisymmetric
  cylinders forms a central magnetic flux tube surrounded by annular
  convection rings. To study the robustness of this type of solution in
  three dimensions, the nonlinear resistive MHD equations are solved
  numerically in a 3D cylindrical wedge from an initially uniform
  vertical magnetic field. It is shown that the 2D result is retrieved
  for small domain radii. However, for larger radii the central axis
  loses its importance and in this case many convection cells form in
  the numerical domain. Magnetic flux is captured between cells where
  flow converges and the reduced amount of flux that congregates at the
  central axis is eroded by the surrounding convection.

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Title: Observation and Simulation of Coronal Kink Instability
Authors: Srivastava, Abhishek K.; Botha, G. J. J.; Arber, T. D.
2012cosp...39.1881S    Altcode: 2012cosp.meet.1881S
  No abstract at ADS

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Title: Observational Signatures of the Coronal Kink Instability with
    Thermal Conduction
Authors: Botha, G. J. J.; Arber, T. D.; Srivastava, Abhishek K.
2012ApJ...745...53B    Altcode: 2011arXiv1111.0456B
  It is known from numerical simulations that thermal conduction
  along magnetic field lines plays an important role in the evolution
  of the kink instability in coronal loops. This study presents the
  observational signatures of the kink instability in long coronal loops
  when parallel thermal conduction is included. The three-dimensional
  nonlinear magnetohydrodynamic equations are solved numerically to
  simulate the evolution of a coronal loop that is initially in an
  unstable equilibrium. The loop has length 80 Mm, width 8 Mm, and
  an initial maximum twist of Φ = 11.5π, where Φ is a function of
  the radius. The initial loop parameters are obtained from a highly
  twisted loop observed in the Transition Region and Coronal Explorer
  (TRACE) 171 Å wave band. Synthetic observables are generated from
  the data. These observables include spatial and temporal averaging to
  account for the resolution and exposure times of TRACE images. Parallel
  thermal conduction reduces the maximum local temperature by up to an
  order of magnitude. This means that different spectral lines are formed
  and different internal loop structures are visible with or without
  the inclusion of thermal conduction. However, the response functions
  sample a broad range of temperatures. The result is that the inclusion
  of parallel thermal conductivity does not have as large an impact on
  observational signatures as the order of magnitude reduction in the
  maximum temperature would suggest; the net effect is a blurring of
  internal features of the loop structure.

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Title: Coronal Kink Instability With Parallel Thermal Conduction
Authors: Botha, Gert J. J.; Arber, Tony D.; Hood, Alan W.; Srivastava,
   A. K.
2012csem.conf....7B    Altcode:
  Thermal conduction along magnetic field lines plays an important
  role in the evolution of the kink instability in coronal loops. In
  the nonlinear phase of the instability, local heating occurs due
  to reconnection, so that the plasma reaches high temperatures. To
  study the effect of parallel thermal conduction in this process, the
  3D nonlinear magnetohydrodynamic (MHD) equations are solved for an
  initially unstable equilibrium. The initial state is a cylindrical loop
  with zero net current. Parallel thermal conduction reduces the local
  temperature, which leads to temperatures that are an order of magnitude
  lower than those obtained without thermal conduction. This process
  is important on the timescale of fast MHD phenomena; it reduces the
  kinetic energy released by an order of magnitude. The impact of this
  process on observational signatures is presented. Synthetic observables
  are generated that include spatial and temporal averaging to account
  for the resolution and exposure times of TRACE images. It was found
  that the inclusion of parallel thermal conductivity does not have as
  large an impact on observables as the order of magnitude reduction
  in the maximum temperature would suggest. The reason is that response
  functions sample a broad range of temperatures, so that the net effect
  of parallel thermal conduction is a blurring of internal features of
  the loop structure.

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Title: Nonlinear Three-dimensional Magnetoconvection around Magnetic
    Flux Tubes
Authors: Botha, G. J. J.; Rucklidge, A. M.; Hurlburt, N. E.
2011ApJ...731..108B    Altcode:
  Magnetic flux in the solar photosphere forms concentrations from small
  scales, such as flux elements, to large scales, such as sunspots. This
  paper presents a study of the decay process of large magnetic flux
  tubes, such as sunspots, on a supergranular scale. Three-dimensional
  nonlinear resistive magnetohydrodynamic numerical simulations are
  performed in a cylindrical domain, initialized with axisymmetric
  solutions that consist of a well-defined central flux tube and an
  annular convection cell surrounding it. As the nonlinear convection
  evolves, the annular cell breaks up into many cells in the azimuthal
  direction, allowing magnetic flux to slip between cells away from the
  central flux tube (turbulent erosion). This lowers magnetic pressure
  in the central tube, and convection grows inside the tube, possibly
  becoming strong enough to push the tube apart. A remnant of the central
  flux tube persists with nonsymmetric perturbations caused by the
  convection surrounding it. Secondary flux concentrations form between
  convection cells away from the central tube. Tube decay is dependent
  on the convection around the tube. Convection cells forming inside the
  tube as time-dependent outflows will remove magnetic flux. (This is
  most pronounced for small tubes.) Flux is added to the tube when flux
  caught in the surrounding convection is pushed toward it. The tube
  persists when convection inside the tube is sufficiently suppressed
  by the remaining magnetic field. All examples of persistent tubes
  have the same effective magnetic field strength, consistent with the
  observation that pores and sunspot umbrae all have roughly the same
  magnetic field strength.

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Title: Chromospheric Resonances above Sunspot Umbrae
Authors: Botha, G. J. J.; Arber, T. D.; Nakariakov, V. M.; Zhugzhda,
   Y. D.
2011ApJ...728...84B    Altcode:
  Three-minute oscillations are observed in the chromosphere above
  sunspot umbrae. One of the models used to explain these oscillations
  is that of a chromospheric acoustic resonator, where the cavity
  between the photosphere and transition region partially reflects
  slow magnetoacoustic waves to form resonances in the lower sunspot
  atmosphere. We present a phenomenological study that compares simulation
  results with observations. The ideal magnetohydrodynamic equations
  are used with a uniform vertical magnetic field and a temperature
  profile that models sunspot atmospheres above umbrae. The simulations
  are initialized with a single broadband pulse in the vertical
  velocity inside the convection zone underneath the photosphere. The
  frequencies in the spectrum of the broadband pulse that lie below
  the acoustic cutoff frequency are filtered out so that frequencies
  equal and above the acoustic cutoff frequency resonate inside
  the chromospheric cavity. The chromospheric cavity resonates with
  approximately three-minute oscillations and is a leaky resonator, so
  that these oscillations generate traveling waves that propagate upward
  into the corona. Thus, there is no requirement that a narrowband
  three-minute signal is present in the photosphere to explain the
  narrowband three-minute oscillations in the chromosphere and corona. The
  oscillations in the chromospheric cavity have larger relative amplitudes
  (normalized to the local sound speed) than those in the corona and
  reproduce the intensity fluctuations of observations. Different umbral
  temperature profiles lead to different peaks in the spectrum of the
  resonating chromospheric cavity, which can explain the frequency shift
  in sunspot oscillations over the solar cycle.

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Title: Thermal conduction effects on the kink instability in
    coronal loops
Authors: Botha, G. J. J.; Arber, T. D.; Hood, A. W.
2011A&A...525A..96B    Altcode:
  Context. Heating of the solar corona by nanoflares, which are small
  transient events in which stored magnetic energy is dissipated by
  magnetic reconnection, may occur as the result of the nonlinear
  phase of the kink instability (Hood et al. 2009). Because of
  the high temperatures reached through these reconnection events,
  thermal conduction cannot be ignored in the evolution of the kink
  instability. <BR /> Aims: To study the effect of thermal conduction
  on the nonlinear evolution of the kink instability of a coronal
  loop. To assess the efficiency of loop heating and the role of thermal
  conduction, both during the kink instability and for the long time
  evolution of the loop. <BR /> Methods: Numerically solve the 3D
  nonlinear magnetohydrodynamic equations to simulate the evolution
  of a coronal loop that is initially in an unstable equilibrium. The
  initial state has zero net current. A comparison is made of the time
  evolution of the loop with thermal conduction and without thermal
  conduction. <BR /> Results: Thermal conduction along magnetic field
  lines reduces the local temperature. This leads to temperatures that
  are an order of magnitude lower than those obtained in the absence
  of thermal conductivity. Consequently, different spectral lines
  are activated with and without the inclusion of thermal conduction,
  which have consequences for observations of solar corona loops. The
  conduction process is also important on the timescale of the fast
  magnetohydrodynamic phenomena. It reduces the kinetic energy released
  by an order of magnitude. <BR /> Conclusions: Thermal conduction plays
  an essential role in the kink instability of coronal loops and cannot
  be ignored in the forward modelling of such loops.

---------------------------------------------------------
Title: Effect of Solar Chromospheric Neutrals on Equilibrium Field
    Structures
Authors: Arber, T. D.; Botha, G. J. J.; Brady, C. S.
2009ApJ...705.1183A    Altcode:
  Solar coronal equilibrium fields are often constructed by
  nonlinear force-free field (NLFFF) extrapolation from photospheric
  magnetograms. It is well known that the photospheric field is not
  force-free and the correct lower boundary for NLFFF construction
  ought to be the top of the chromosphere. To compensate for this,
  pre-filtering algorithms are often applied to the photospheric data
  to remove the non-force-free components. Such pre-filtering models,
  while physically constrained, do not address the mechanisms that may be
  responsible for the field becoming force-free. The chromospheric field
  can change through, for example, field expansion due to gravitational
  stratification, reconnection, or flux emergence. In this paper, we study
  and quantify the effect of the chromospheric neutrals on equilibrium
  field structures. It is shown that, depending on the degree to which
  the photospheric field is not force-free, the chromosphere will change
  the structure of the equilibrium field. This is quantified to give an
  estimate of the change in α profiles one might expect due to neutrals
  in the chromosphere. Simple scaling of the decay time of non-force-free
  components of the magnetic field due to chromospheric neutrals is also
  derived. This is used to quantify the rate at which, or equivalent at
  which height, the chromosphere is expected to become force-free.

---------------------------------------------------------
Title: Numerical simulations of rotating axisymmetric sunspots
Authors: Botha, G. J. J.; Busse, F. H.; Hurlburt, N. E.; Rucklidge,
   A. M.
2008MNRAS.387.1445B    Altcode: 2008MNRAS.tmp..702B; 2008arXiv0804.4429B
  A numerical model of axisymmetric convection in the presence of
  a vertical magnetic flux bundle and rotation about the axis is
  presented. The model contains a compressible plasma described by
  the non-linear MHD equations, with density and temperature gradients
  simulating the upper layer of the Sun's convection zone. The solutions
  exhibit a central magnetic flux tube in a cylindrical numerical domain,
  with convection cells forming collar flows around the tube. When the
  numerical domain is rotated with a constant angular velocity, the plasma
  forms a Rankine vortex, with the plasma rotating as a rigid body where
  the magnetic field is strong, as in the flux tube, while experiencing
  sheared azimuthal flow in the surrounding convection cells, forming
  a free vortex. As a result, the azimuthal velocity component has its
  maximum value close to the outer edge of the flux tube. The azimuthal
  flow inside the magnetic flux tube and the vortex flow is prograde
  relative to the rotating cylindrical reference frame. A retrograde
  flow appears at the outer wall. The most significant convection cell
  outside the flux tube is the location for the maximum value of the
  azimuthal magnetic field component. The azimuthal flow and magnetic
  structure are not generated spontaneously, but decay exponentially in
  the absence of any imposed rotation of the cylindrical domain.

---------------------------------------------------------
Title: Numerical simulations of convection around magnetic features
    in the solar convection zone
Authors: Botha, Gert; Rucklidge, Alastair; Hurlburt, Neal
2008cosp...37..354B    Altcode: 2008cosp.meet..354B
  On the solar surface, magnetic flux elements collect in regions of
  converging flow and grow in field strength to become pores. In order to
  investigate convection around these magnetic flux tubes, we initialize
  a cylindrical simulation with an axisymmetric solution consisting of
  a flux tube surrounded by an inflowing collar flow. This is allowed
  to evolve using the 3D nonlinear magnetohydrodynamic equations for
  compressible resistive flow. The axisymmetric collar flow breaks into
  convection cells around the flux tube that are highly dynamic. Through
  vigorous convection they change the shape of the central magnetic flux
  tube, but do not succeed in destroying its integrity. We relate our
  calculation to recent helioseismic measurements of subsurface flows.

---------------------------------------------------------
Title: Nonaxisymmetric Instabilities of Convection around Magnetic
    Flux Tubes
Authors: Botha, G. J. J.; Rucklidge, A. M.; Hurlburt, N. E.
2007ApJ...662L..27B    Altcode:
  On the surface of the Sun, magnetic flux elements collect in regions
  of converging flow, grow in field strength, and become pores, which
  have been observed to exhibit nonaxisymmetric structure over a range of
  scales. Around a fully developed sunspot, as well as the fine scale of
  the penumbra, the moat sometimes shows a clearly observable spokelike
  structure at low azimuthal wavenumbers. We investigate the formation
  of azimuthal structure by computing the linear stability properties of
  fully nonlinear axisymmetric magnetoconvection, which takes the form of
  a central flux tube surrounded by a convecting field-free region. We
  find steady and oscillatory instabilities with a preferred azimuthal
  wavenumber. The unstable modes are concentrated in the convecting
  region close to the outer edge of the flux tube. The instability is
  driven by convection and is not a magnetic fluting instability.

---------------------------------------------------------
Title: Numerical simulations of sunspots
Authors: Botha, G. J. J.; Rucklidge, A. M.; Hurlburt, N. E.
2007IAUS..239..507B    Altcode:
  No abstract at ADS

---------------------------------------------------------
Title: Differential rotation and angular momentum
Authors: Botha, G. J. J.; Evangelidis, E. A.
2007IAUS..239..451B    Altcode:
  No abstract at ADS

---------------------------------------------------------
Title: Reply to comment on “Relativistic Landau resonances”
Authors: Botha, G. J. J.; Evangelidis, E. A.
2007JGRA..112.5206B    Altcode: 2007JGRA..11205206B
  No abstract at ADS

---------------------------------------------------------
Title: Numerical Simulations of Rotating Sunspots
Authors: Botha, G. J. J.; Rucklidge, A. M.; Busse, F. H.; Hurlburt,
   N. E.
2006ESASP.617E..53B    Altcode: 2006soho...17E..53B
  No abstract at ADS

---------------------------------------------------------
Title: Converging and diverging convection around axisymmetric
    magnetic flux tubes
Authors: Botha, G. J. J.; Rucklidge, A. M.; Hurlburt, N. E.
2006MNRAS.369.1611B    Altcode: 2006MNRAS.tmp..605B
  A numerical model of idealized sunspots and pores is presented, where
  axisymmetric cylindrical domains are used with aspect ratios (radius
  versus depth) up to 4. The model contains a compressible plasma with
  density and temperature gradients simulating the upper layer of the
  Sun's convection zone. Non-linear magnetohydrodynamic equations are
  solved numerically and time-dependent solutions are obtained where the
  magnetic field is pushed to the centre of the domain by convection
  cells. This central magnetic flux bundle is maintained by an inner
  convection cell, situated next to it and with a flow such that there
  is an inflow at the top of the numerical domain towards the flux
  bundle. For aspect ratio 4, a large inner cell persists in time, but
  for lower aspect ratios it becomes highly time dependent. For aspect
  ratios 2 and 3 this inner convection cell is smaller, tends to be
  situated towards the top of the domain next to the flux bundle, and
  appears and disappears with time. When it is gone, the neighbouring
  cell (with an opposite sense of rotation, i.e. outflow at the top)
  pulls the magnetic field away from the central axis. As this happens
  a new inner cell forms with an inflow which pushes the magnetic field
  towards the centre. This suggests that to maintain their form, both
  pores and sunspots need a neighbouring convection cell with inflow at
  the top towards the magnetic flux bundle. This convection cell does not
  have to be at the top of the convection zone and could be underneath
  the penumbral structure around sunspots. For an aspect ratio of 1,
  there is not enough space in the numerical domain for magnetic flux and
  convection to separate. In this case the solution oscillates between
  two steady states: two dominant convection cells threaded by magnetic
  field and one dominant cell that pushes magnetic flux towards the
  central axis.

---------------------------------------------------------
Title: Relativistic Landau resonances
Authors: Evangelidis, E. A.; Botha, G. J. J.
2005JGRA..110.2216E    Altcode: 2005JGRA..11002216E
  The possible interactions between plasma waves and relativistic charged
  particles are considered. An electromagnetic perturbation in the plasma
  is formulated as an elliptically polarized wave, and the collisionless
  plasma is described by a distribution in phase space, which is realized
  in cylindrical coordinates. The linearized Vlasov equation is solved
  in the semi-relativistic limit, to obtain the distribution function in
  the rest frame of the observer. The perturbed currents supported by
  the ionized medium are then calculated, so that an expression can be
  written for the total amount of energy available for transfer through
  the Landau mechanism. It is found that only certain modes of the
  perturbed current are available for this energy transfer. The final
  expressions are presented in terms of Stokes parameters, and applied
  to the special cases of a thermal as well as a nonthermal plasma. The
  thermal plasma is described by a Maxwellian distribution, while two
  nonthermal distributions are considered: the kappa distribution and
  a generalized Weibull distribution.

---------------------------------------------------------
Title: Cylindrical linear force-free magnetic fields with toroidal
    flux surfaces
Authors: Botha, G. J. J.; Evangelidis, E. A.
2004MNRAS.350..375B    Altcode:
  A linear force-free field solution is presented in cylindrical
  coordinates, formulated in terms of trigonometric and Bessel
  functions. A numerical exploration has revealed that this solution
  describes magnetic field lines that meander in Cartesian space, as well
  as field lines that lie on toroidal flux surfaces. These tori are in
  (or close to) the plane perpendicular to the cylindrical axis. Nested
  tori, as well as tori with shells that have finite thickness, were
  found. The parameter space of the solution shows that the tori exist
  within a bounded range of values.

---------------------------------------------------------
Title: Cylindrical Solutions of Force Free Magnetic Fields
Authors: Botha, G. J. J.; Evangelidis, E. A.
2004IAUS..219..743B    Altcode: 2003IAUS..219E.148B
  A general method for the solution of force free magnetic fields in
  cylindrical coordinates is presented and a solution is formulated as
  a combination of trigonometric and Bessel functions. The numerical
  exploration has revealed the existence of trapped and untrapped orbits
  in the sense that they remain (or not) inside a specific part of space
  volume. Most interestingly orbits have been identified that wind on
  toroidal surfaces perpendicular to the z-axis.

---------------------------------------------------------
Title: Alfvén Wave-Charged Particle Interactions through Landau
    Damping
Authors: Evangelidis, E. A.; Botha, G. J. J.
2004IAUS..219..748E    Altcode: 2003IAUS..219E.147E
  The possibility of Landau damping of energetic particles in resonance
  with Alfven waves was first raised in the context of pulsar envelopes
  some decades ago. Today due to satellite observations there is a
  renewed interest in the topic as one of the possible mechanisms for
  transfer of energy in the solar atmosphere and solar wind. We therefore
  analyze the interaction of elliptically polarised Alfven waves with a
  semi-relativistic collisionless charged particle distribution by using
  the linearised Vlasov equation. Taking into consideration developments
  in the theory of Bessel functions we write the results in a concise
  form. The transfer of energy is thus expressed in terms of particle
  parameters as well as the Stokes parameter which is associated with
  the total energy of the wave. The frequency of the Alfven wave must
  be comparable with or larger than that of the cyclotron frequency
  in order to play an efficient role in the absorption or emission of
  the energy of the charged particle in agreement with the theorem of
  energy conservation. The role of the relative velocity of the particles
  against the Alfven velocity is elucidated in a natural way as a result
  of relativistic considerations.

---------------------------------------------------------
Title: A new family of solutions of the force-free field equation
Authors: Evangelidis, E. A.; Botha, G. J. J.
2003SoPh..213...69E    Altcode:
  A new family of solutions has been found for force-free magnetic fields
  and Beltrami flows, which admits a complete classification in terms of
  the eigenvalues of the problem. In the absence of boundary values to
  determine them uniquely, the eigenvalues correspond to the entire set
  of real numbers, except for zero. The eigenvalues are degenerate in
  that each eigenvalue has many eigensolutions associated with it. For
  each eigensolution we have been able to identify sets of equilibrium
  or null points and lines. The linear mappings of these null points
  and lines are all unstable. Finally, we derive the first integral of
  energy associated with this family of solutions.

---------------------------------------------------------
Title: A new family of solutions of the force free field equation
Authors: Evangelidis, E. A.; Botha, G. J. J.
2002ESASP.505..401E    Altcode: 2002solm.conf..401E; 2002IAUCo.188..401E
  A new family of solutions has been found for force free magnetic fields
  and Beltrami flows, which admits a complete classification in terms of
  the eigenvalues of the problem. In the absence of boundary values to
  determine them uniquely, the eigenvalues correspond to the entire set of
  real numbers, except for zero. The eigenvalues are degenerate in that
  each eigenvalue has many eigensolutions associated with it. For each
  eigensolution we have been able to identify dense sets of equilibrium
  or null points and lines. We present a linear analysis of the magnetic
  field line configurations around these null points and lines, and derive
  the first integral of energy associated with this family of solutions.

---------------------------------------------------------
Title: Photoionized Plasma Calculations using Laboratory and
    Astrophysical Models
Authors: Phillips, M. E.; Keenan, F. P.; Rose, S. J.; Botha, G. J. J.;
   Foord, M. E.; Heeter, R. F.; Ferland, G. J.
2001ASPC..247..123P    Altcode: 2001scpp.conf..123P
  No abstract at ADS

---------------------------------------------------------
Title: A. Cylindrical Formulation of Force Free Magnetic Fields
Authors: Evangelidis, E. A.; Botha, G. J. J.
2001IAUS..203..270E    Altcode:
  It is shown that the behaviour of force free magnetic fields is
  governed by the existence of a first integral of energy. We give its
  explicit expression and we identify the parametric space where these
  fields are ergodic or non-ergodic. We further compare results based
  on toroidal geometries with results based on cylindrical geometries,
  to show the modification due to toroidal curvature.

---------------------------------------------------------
Title: A developed stage of Alfvén wave phase mixing
Authors: Botha, G. J. J.; Arber, T. D.; Nakariakov, V. M.; Keenan,
   F. P.
2000A&A...363.1186B    Altcode:
  Alfvén wave phase mixing is an extensively studied mechanism for
  dissipating wave energy in an inhomogeneous medium. It is common in the
  vast majority of phase mixing papers to assume that even though short
  scale lengths and steep gradients develop as a result of phase mixing,
  nonlinear wave coupling does not occur. However, weakly nonlinear
  studies have shown that phase mixing generates magnetoacoustic
  modes. Numerical results are presented which show the nonlinear
  generation of magnetosonic waves by Alfvén wave phase mixing. The
  efficiency of the effect is determined by the wave amplitude, the
  frequency of the Alfvén waves and the gradient in the background
  Alfvén speed. Weakly nonlinear theory has shown that the amplitude
  of the fast magnetosonic wave grows linearly in time. The simulations
  presented in this paper extend this result to later times and show
  saturation of the fast magnetosonic component at amplitudes much lower
  than that of the Alfvén wave. For the case where Alfvén waves are
  driven at the boundary, simulating photospheric footpoint motion,
  a clear modulation of the saturated amplitude is observed. All the
  results in this paper are for a low amplitude (&lt;= 0.1), single
  frequency Alfvén wave and a uniform background magnetic field in
  a two dimensional domain. For this simplified geometry, and with a
  monochromatic driver, we concluded that the nonlinear generation of
  fast modes has little effect on classical phase mixing.

---------------------------------------------------------
Title: Extreme ultraviolet emission lines of Nixii in laboratory
    and solar spectra
Authors: Keenan, F. P.; Botha, G. J. J.; Matthews, A.; Lawson, K. D.;
   Coffey, I. H.
2000MNRAS.318...37K    Altcode:
  Wavelengths for emission lines arising from
  3s<SUP>2</SUP>3p<SUP>5</SUP>-3s3p<SUP>6</SUP> and
  3s<SUP>2</SUP>3p<SUP>5</SUP>-3s<SUP>2</SUP>3p<SUP>4</SUP>3d
  transitions in Nixii have been measured in extreme ultraviolet
  spectra of the Joint European Torus (JET) tokamak. The
  3s<SUP>2</SUP>3p<SUP>5</SUP> <SUP>2</SUP>P<SUB>1/2</SUB>-
  3s<SUP>2</SUP>3p<SUP>4</SUP>(<SUP>3</SUP>P)3d
  <SUP>2</SUP>D<SUB>3/2</SUB> line is found to lie at 152.90+/-0.02Å,
  a significant improvement over the previous experimental determination
  of 152.95+/-0.5Å. This new wavelength is in good agreement with a solar
  identification at 152.84+/-0.06Å, confirming the presence of this line
  in the solar spectrum. The Nixii feature at 152.15Å may be a result
  only of the 3s<SUP>2</SUP>3p<SUP>5</SUP> <SUP>2</SUP>P<SUB>3/2</SUB>-
  3s<SUP>2</SUP>3p<SUP>4</SUP>(<SUP>3</SUP>P)3d
  <SUP>2</SUP>D<SUB>5/2</SUB> transition, rather than a blend of this
  line with 3s<SUP>2</SUP>3p<SUP>5</SUP> <SUP>2</SUP>P<SUB>3/2</SUB>-
  3s<SUP>2</SUP>3p<SUP>4</SUP>(<SUP>3</SUP>P)3d
  <SUP>2</SUP>P<SUB>1/2</SUB>, as previously
  suggested. Unidentified emission lines at 295.32 and
  317.61Å in solar flare spectra from the Skylab mission are
  tentatively identified as the 3s<SUP>2</SUP>3p<SUP>5</SUP>
  <SUP>2</SUP>P<SUB>3/2</SUB>-3s3p<SUP>6</SUP>
  <SUP>2</SUP>S<SUB>1/2</SUB> and 3s<SUP>2</SUP>3p<SUP>5</SUP>
  <SUP>2</SUP>P<SUB>1/2</SUB>-3s3p<SUP>6</SUP> <SUP>2</SUP>S<SUB>1/2</SUB>
  transitions in Nixii, which have laboratory wavelengths of 295.33 and
  317.50Å, respectively. Additional support for these identifications
  is provided by the line intensity ratio for the solar features, which
  shows good agreement between theory and observation.

---------------------------------------------------------
Title: The structure of force-free magnetic fields
Authors: Evangelidis, E. A.; Vaughan, L. L.; Botha, G. J. J.
2000SoPh..193...17E    Altcode:
  Incontrovertible evidence is presented that the force-free magnetic
  fields exhibit strong stochastic behavior. Arnold's solution is
  given with the associated first integral of energy. A subset of the
  solution is shown to be non-ergodic whereas the full solution is shown
  to be ergodic. The first integral of energy is applied to the study
  of these fields to prove that the equilibrium points of such magnetic
  configurations are saddle points. Finally, the potential function of
  the first integral of energy is shown to be a member of the Helmholtz
  family of solutions. Numerical results corroborate the theoretical
  conclusions and demonstrate the robustness of the energy integral,
  which remains constant for arbitrarily long computing times.