List of publications

Books

• Rob H. Bisseling, Parallel Scientific Computation: A Structured Approach using BSP (Second edition) Oxford University Press, September 2020. 416 pages. ISBN 9780198788348 (hardback), ISBN 9780198788355 (paperback). Personal book page with supplementary material (slides, software)
• Rob Bisseling, Martin Bootsma, Jason Frank, Ross Kang, Tobias Muller, Alessandro Sbrizzi, Cristian Spitoni, and Paul Zegeling Proceedings of the 106th European Study Group Mathematics with Industry, Utrecht, January 26–30, 2015. 122 pages. PDF file of book
• Rob Bisseling, Karma Dajani, Tammo Jan Dijkema, Johan van de Leur, Paul Zegeling (Editors), Proceedings 58th European Study Group Mathematics with Industry, Utrecht 29 Jan. - 2 Feb. 2007. 115 pages. PDF file of book

Articles in journals and conference proceedings

1. R. Bisseling and R. Kosloff
   "The fast Hankel transform as a tool in the solution of the time dependent Schrödinger equation"
   J. Comput. Phys. 59 (1985) pp. 136-151
2. I. Benjamin, R. H. Bisseling, R. Kosloff, R. D. Levine, J. Manz, and H. H. R. Schor
   "Quasi-bound states of coupled Morse oscillators"
   Chem. Phys. Lett. 116 (1985) pp. 255-261
3. R. H. Bisseling, R. Kosloff, and J. Manz
   "Dynamics of hyperspherical and local mode resonance decay studied by time dependent wave packet propagation"
   J. Chem. Phys. 83 (1985) pp. 993-1004
4. R. H. Bisseling, R. Kosloff, J. Manz, and H. H. R. Schor
   "Mode specific resonance decay"
   Ber. Bunsenges. Phys. Chem. 89 (1985) pp. 270-274
5. R. H. Bisseling, R. Kosloff, and D. Kosloff
   "Multidimensional interpolation and differentiation based on an accelerated sinc interpolation procedure"
   Comput. Phys. Comm. 39 (1986) pp. 313-332
6. R. H. Bisseling, R. Kosloff, J. Manz, F. Mrugala, J. Römelt, and G. Weichselbaumer
   "Lifetimes of local and hyperspherical vibrational resonances of ABA molecules"
   J. Chem. Phys. 86 (1987) pp. 2626-2638
7. R. H. Bisseling, R. Kosloff, R. B. Gerber, M. A. Ratner, L. Gibson, and C. Cerjan
   "Exact time-dependent quantum mechanical dissociation dynamics of I2He: comparison of exact time-dependent quantum calculation with the quantum time-dependent self-consistent field (TDSCF) approximation"
   J. Chem. Phys. 87 (1987) pp. 2760-2765
8. R. H. Bisseling, P. L. Gertitschke, R. Kosloff, and J. Manz
   "Bi- and unimolecular resonances of the collinear reaction"
   J. Chem. Phys. 88 (1988) pp. 6191-6199
9. R. H. Bisseling and R. Kosloff
   "Optimal choice of grid points in multidimensional pseudospectral Fourier methods"
   J. Comput. Phys. 76 (1988) pp. 243-262
10. L. D. J. C. Loyens and R. H. Bisseling
    "The formal construction of a parallel triangular system solver"
    In: Proc. Int. Conf. on Mathematics of Program Construction, Groningen 1989
    Lecture Notes in Computer Science, Vol. 375, Springer-Verlag, Berlin 1989, pp. 325-334
11. R. H. Bisseling and J. G. G. van de Vorst
    "Parallel LU decomposition on a transputer network"
    In: Proc. Shell Conf. on Parallel Computing, Amsterdam 1988, Lecture Notes in Computer Science, Vol. 384, Springer-Verlag, Berlin 1989, pp. 61-77
12. C. Leforestier, R. H. Bisseling, C. Cerjan, M. D. Feit, R. Friesner, A. Guldberg, A. Hammerich, G. Jolicard, W. Karrlein, H.-D. Meyer, N. Lipkin, O. Roncero, and R. Kosloff
    "A comparison of different propagation schemes for the time dependent Schrödinger equation"
    J. Comput. Phys. 94 (1991) pp. 59-80
13. R. H. Bisseling and J. G. G. van de Vorst
    "Parallel triangular system solving on a mesh network of transputers"
    SIAM J. Sci. Stat. Comput. 12 (1991) pp. 787-799
14. R. H. Bisseling and L. D. J. C. Loyens
    "Towards peak parallel LINPACK performance on 400 transputers"
    Supercomputer 45 (1991) pp. 20-27 Received honourable mention at the SuParCup '91 competition of the Mannheim Supercomputer '91 Conference.
15. R. H. Bisseling
    "Parallel iterative solution of sparse linear systems on a transputer network"
    In: A. E. Fincham and B. Ford (Eds), Parallel Computation, Oxford University Press, Oxford, UK 1993, pp. 253-271
16. R. H. Bisseling, T. M. Doup, and L. D. J. C. Loyens
    "A parallel interior point algorithm for linear programming on a network of transputers"
    Annals of Operations Research 43 (1993) pp. 51-86
17. A. F. van der Stappen, R. H. Bisseling, and J. G. G. van de Vorst
    "Parallel sparse LU decomposition on a mesh network of transputers"
    SIAM J. Matrix Anal. Appl. 14 (1993) pp. 853-879
18. R. H. Bisseling and W. F. McColl
    "Scientific Computing on Bulk Synchronous Parallel Architectures"
    Preprint 836, Dept. of Mathematics, Utrecht University, Dec. 1993, 31pp.
19. R. H. Bisseling and W. F. McColl
    "Scientific Computing on Bulk Synchronous Parallel Architectures"
    In: B. Pehrson and I. Simon (Eds.), Proc. IFIP 13th World Computer Congress, Vol. I, North-Holland, 1994, pp. 509-514
    Longer version: "Scientific Computing on Bulk Synchronous Parallel Architectures"
    Preprint 836, Dept. of Mathematics, Utrecht University, Dec. 1993, 31pp.
20. J. Koster and R.H. Bisseling
    "An Improved Algorithm for Parallel Sparse LU Decomposition on a Distributed-Memory Multiprocessor"
    In: J. G. Lewis (Ed.), Proc. 5th SIAM Conf. on Applied Linear Algebra, SIAM, Philadelphia, 1994, pp. 397-401
21. R.H. Bisseling
    "Sparse Matrix Computations on Bulk Synchronous Parallel Computers"
    In: G. Alefeld, O. Mahrenholtz, and R. Mennicken (Eds.), Proc. ICIAM'95. Issue 1. Numerical Analysis, Scientific Computing, Computer Science, Akademie Verlag, Berlin, 1996, pp. 127-130.
22. R. H. Bisseling
    "Basic Techniques for Numerical Linear Algebra on Bulk Synchronous Parallel Computers"
    In: L. Vulkov, J. Wasniewski, and P. Yalamov (Eds.), Proc. First Workshop on Numerical Analysis and Applications, Rousse, Bulgaria 1996, Lecture Notes in Computer Science, Vol. 1196, Springer-Verlag, Berlin 1997, pp. 46-57.
23. J. M. D. Hill, B. McColl, D. C. Stefanescu, M. W. Goudreau, K. Lang, S. B. Rao, T. Suel, T. Tsantilas, R. H. Bisseling
    "BSPlib: the BSP Programming Library"
    Parallel Computing 24 (1998) pp. 1947-1980. Previous version (Preprint May 1997).
24. G. Horvitz and R. H. Bisseling
    "Designing a BSP version of ScaLAPACK"
    In: B. Hendrickson et al. (Eds.), Proceedings Ninth SIAM Conference on Parallel Processing for Scientific Computing, SIAM, Philadelphia, 1999.
25. M. Alves de Inda, R. H. Bisseling, and D. K. Maslen
    "Parallel Fast Legendre Transform" In: W. Zwieflhofer and N. Kreitz, Proceedings Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology - Towards TeraComputing, Reading, UK, Nov. 16-20, 1998, World Scientific, Singapore, 1999, pp. 87-108.
26. M. A. Inda, R. H. Bisseling, and D. K. Maslen
    "On the efficient parallel computation of Legendre transforms"
    SIAM Journal on Scientific Computing 23, No. 1 (2001) pp. 271-303.
27. M. A. Inda and R. H. Bisseling
    "A simple and efficient parallel FFT algorithm using the BSP model"
    Parallel Computing 27, No. 14 (2001) pp. 1847-1878. Previous version (Preprint June 2001).
28. R. L. C. Vink, G. T. Barkema, M. A. Stijnman, and R. H. Bisseling
    "Device-size atomistic models of amorphous silicon" Physical Review B. 64 245214 (2001).
29. A. van Heukelum and G. T. Barkema and R. H. Bisseling
    "DNA electrophoresis studied with the cage model"
    Journal of Computational Physics 180, No. 1 (2002) pp. 313-326. Final preprint version.
30. M. A. Stijnman, R. H. Bisseling, and G. T. Barkema
    "Partitioning 3D space for parallel many-particle simulations"
    Computer Physics Communications 149, No. 3 (2003) pp. 121-134. Previous version (Preprint August 2002).
31. B. Vastenhouw and R. H. Bisseling
    "A Two-Dimensional Data Distribution Method for Parallel Sparse Matrix-Vector Multiplication"
    SIAM Review, 47, No. 1 (2005) pp. 67-95.
32. Rob H. Bisseling, Jaroslaw Byrka, Selin Cerav-Erbas, Nebojsa Gvozdenovic, Mathias Lorenz, Rudi Pendavingh, Colin Reeves, Matthias Roeger, and Arie Verhoeven
    Partitioning a Call Graph.
    Proceedings Study Group Mathematics with Industry 2005, Amsterdam, pp. 95-107.
    Shorter Dutch version: Softwarepartitionering, part of article in Nieuw Archief voor Wiskunde Vol. 5/7, Nr. 1 (March 2006), pp. 44 - 51.
33. R. H. Bisseling and W. Meesen
    "Communication balancing in parallel sparse matrix-vector multiplication"
    Electronic Transactions on Numerical Analysis, 21, (2005) pp. 47-65, (Special Issue on Combinatorial Scientific Computing).
34. K. D. Devine, E. G. Boman, R.T. Heaphy, R. H. Bisseling, and U. V. Catalyurek
    "Parallel Hypergraph Partitioning for Scientific Computing".
    Proceedings IEEE International Parallel & Distributed Processing Symposium 2006, IEEE Press.
35. Rob H. Bisseling and Ildiko Flesch,
    "Mondriaan sparse matrix partitioning for attacking cryptosystems by a parallel block Lanczos algorithm - a case study"
    Parallel Computing 32 Nr. 7/8 (2006) pp. 551-567. Final preprint (Sept 2006).
36. Rob H. Bisseling and Ildiko Flesch,
    "Mondriaan sparse matrix partitioning for attacking cryptosystems by a parallel block Lanczos algorithm - a case study" (shorter preliminary version)
    In: Parallel Computing: Current and Future Issues of High-End Computing, Proceedings ParCo 2005, Vol. 33 of NIC Series, John von Neumann Institute for Computing, Julich, Germany (2006) pp. 819-826.
37. Peter Korteweg, Misja Nuyens, Rob Bisseling, Tom Coenen, Henri van den Esker, Bart Frenk, Roland de Haan, Birgit Heydenreich, Remco van der Hofstad, Jos in 't Panhuis, Lieneke Spanjers, and Maarten van Wieren,
    "Math Saves The Forest: analysis and optimization of message delivery in wireless sensor networks
    Proceedings Study Group Mathematics with Industry 2006, Eindhoven, pp. 117-140.
38. Marco Bijvank, Jarek Byrka, Peter van Heijster, Alexander Gnedin, Tomasz Olejniczak, Tomasz Swist, Joanna Zyprych, Rob Bisseling, Jeroen Mulder, Marc Paelinck, and Heidi de Ridder,
    "Cabin crew rostering at KLM: optimization of reserves"
    Proceedings Study Group Mathematics with Industry 2007, Utrecht University, pp. 27-43.
39. F. Manne and R. H. Bisseling
    "A Parallel Approximation Algorithm for the Weighted Maximum Matching Problem"
    In: Proc. Seventh Int. Conf. on Parallel Processing and Applied Mathematics (PPAM 2007),
    Lecture Notes in Computer Science, Vol. 4967, Springer-Verlag, Berlin, pp. 708-717.
40. A. N. Yzelman and Rob H. Bisseling Cache-oblivious sparse matrix-vector multiplication by using sparse matrix partitioning methods by Albert-Jan N. Yzelman and Rob H. Bisseling, SIAM Journal on Scientific Computing, 31, No. 4 (2009) pp. 3128-3154.
41. Nelly Litvak, Muhammad Umer Altaf, Alina Barbu, Sudhir Jain, Denis Miretskiy, Leila Mohammadi, Ertan Onur, Jos in 't panhuis, Julius Harry Sumihar, Michel Vellekoop, Sandra van Wijk, and Rob Bisseling,
    "Increasing Detection Performance of Surveillance Sensor Networks"
    Proceedings Study Group Mathematics with Industry 2008, University of Twente, pp. 95-115.
42. Parallel Greedy Graph Matching using an Edge Partitioning Approach"
    by Md. Mostofa Ali Patwary, Rob H. Bisseling, and Fredrik Manne. Proceedings of the Fourth ACM SIGPLAN Workshop on High-level Parallel Programming and Applications (HLPP 2010), pp. 45-54, September, 2010.
43. Exact enumeration of self-avoiding walks by R. D. Schram, G. T Barkema, and R. H. Bisseling. Journal of Statistical Mechanics: Theory and Experiment (2011) p06019.
44. Routing for analog chip designs at NXP Semiconductors by Marjan van den Akker, Theo Beelen, Rob H. Bisseling, Bas Fagginger Auer, Frederik von Heymann, Tobias Mueller, and Joost Rommes
    Proceedings Study Group Mathematics with Industry 2011, Vrije Universiteit, Amsterdam, pp. 117-131.
45. Two-dimensional cache-oblivious sparse matrix-vector multiplication by Albert-Jan N. Yzelman and Rob H. Bisseling, Parallel Computing 37 (2011) pp. 806-819.
46. A cache-oblivious sparse matrix-vector multiplication scheme based on the Hilbert curve by Albert-Jan N. Yzelman and Rob H. Bisseling. In: Progress in Industrial Mathematics at ECMI 2010, M. Gunther, A. Bartel, M. Brunk, S. Schops, and M. Striebel (eds), Mathematics in Industry Series 17, Springer-Verlag Berlin, 2012, pp. 627-633.
47. An Object-oriented BSP Library for Multicore Programming by Albert-Jan Yzelman and Rob Bisseling, Concurrency and Computation: Practice & Experience 24 No. 5 (2012), pp. 533-553.
48. Rob H. Bisseling, Bas O. Fagginger Auer, A. N. Yzelman, Tristan van Leeuwen, and Umit V. Catalyurek,
    Two-dimensional approaches to sparse matrix partitioning, Chapter 12 in Combinatorial Scientific Computing, CRC Press, Taylor & Francis Group, Boca Raton, FL, 2012, pages 321-349.
49. Folkert Bleichrodt, Rob H. Bisseling, and Henk A. Dijkstra, Accelerating a barotropic ocean model using a GPU.
    Ocean Modelling 41 (2012) pp. 16–21.
50. B. O. Fagginger Auer and R. H. Bisseling, A GPU algorithm for greedy graph matching, Proceedings Facing the Multicore Challenge II, Karlsruhe 2011, Lecture Notes in Computer Science 7174, Springer-Verlag, Berlin 2012, pp. 108-119.
51. Raoul D. Schram, Gerard T. Barkema, and Rob H. Bisseling, SAWdoubler: a program for counting self-avoiding walks, Computer Physics Communications, 184 (2013), pp. 891-898.
52. B. O. Fagginger Auer and R. H. Bisseling, Graph Coarsening and Clustering on the GPU, In D. A. Bader, H. Meyerhenke, P. Sanders, and D. Wagner, editors, Graph Partitioning and Graph Clustering, Contemporary Mathematics Series, Vol. 588, AMS, Providence, RI, 2013, pp. 223-240.
53. B. O. Fagginger Auer and R. H. Bisseling, Abusing a Hypergraph Partitioner for Unweighted Graph Partitioning, In D. A. Bader, H. Meyerhenke, P. Sanders, and D. Wagner, editors, Graph Partitioning and Graph Clustering, Contemporary Mathematics Series, Vol. 588, AMS, Providence, RI, 2013, pp. 19-35.
54. O. Fortmeier, H.M. Bucker, B.O. Fagginger Auer, R.H. Bisseling A new metric enabling an exact hypergraph model for the communication volume in distributed-memory parallel applications.
    Parallel Computing, 39 No. 8 (2013), pp. 319–335.
55. A. N. Yzelman, R. H. Bisseling, D. Roose, and K. Meerbergen, MulticoreBSP for C: a high-performance library for shared-memory parallel programming, International Journal of Parallel Programming, 42 No. 4 (2014), pp. 619-642.
56. D. M. Pelt and R. H. Bisseling, A medium-grain method for fast 2D bipartitioning of sparse matrices.
    Proceedings IEEE International Parallel & Distributed Processing Symposium 2014, IEEE Press, pp. 529-539.
57. B. O. Fagginger Auer and R. H. Bisseling, Efficient matching for column intersection graphs.
    ACM Journal of Experimental Algorithmics, 19 (2014), Article 1.3.
58. Rob Bisseling, Fengnan Gao, Patrick Hafkenscheid, Reijer Idema, Tomasz Jetka, Valia Guerra Ones, Debanshu Ratha, and Monika Sikora, Calculating Traffic based on Road Sensor Data
    Proceedings Study Group Mathematics with Industry 2014, Technische Universiteit Delft, pp. 2-22.
59. D. M. Pelt and R. H. Bisseling, An exact algorithm for sparse matrix bipartitioning, by Daniel M. Pelt and Rob H. Bisseling, Journal of Parallel and Distributed Computing, 85 (2015) pp. 79-90. Postprint version
60. Rob Bisseling, Jason Frank, Haris Gavranovic, Jasper van Heugten, Anna Kruseman, Daphne van Leeuwen, and Christian Reinhardt, Inferring transportation modes from smartphone sensors
    Proceedings Study Group Mathematics with Industry 2015, Universiteit Utrecht, pp. 21-33.
61. Raoul D. Schram, Gerard T. Barkema, Rob H. Bisseling, and Nathan Clisby, Exact enumeration of self-avoiding walks on BCC and FCC lattices Journal of Statistical Mechanics: Theory and Experiment (2017), article 083208. Published article.
62. Jan-Willem Buurlage, Tom Bannink, and Rob H. Bisseling, Bulk: a Modern C++ Interface for Bulk-Synchronous Parallel Programs, in Proceedings Euro-Par 2018, Lecture Notes in Computer Science, Vol. 11014, Springer, 2018, pp. 519-532. Published version.
63. J.W. Buurlage, R.H. Bisseling, and K.J. Batenburg, A geometric partitioning method for distributed tomographic reconstruction, Parallel Computing, 81 (2019) pp. 104-121. Open access.
64. Jan-Willem Buurlage, Rob H. Bisseling, Willem Jan Palenstijn, and K. Joost Batenburg, A projection-based data partitioning method for distributed tomographic reconstruction, Proceedings 2020 SIAM Conference on Parallel Processing for Scientific Computing (PP20), pp. 58-68.
65. Timon E. Knigge and Rob H. Bisseling, An improved exact algorithm and an NP-completeness proof for sparse matrix bipartitioning, Parallel Computing, 96 (2020) Article 102640. Postprint version
66. Filip Pawłowski, Rob H. Bisseling, Bora Ucar, and A. N. Yzelman, Combinatorial Tiling for Sparse Neural Networks, in Proceedings IEEE High Performance Extreme Computing Conference 2020 (HPEC 2020), pp. 1-7. Published version.
67. Engelina L. Jenneskens and Rob H. Bisseling, Exact k-way sparse matrix partitioning, Proceedings 12th IEEE Workshop Parallel/Distributed Combinatorics and Optimization (PDCO'22), 2022, pp. 754-763.
68. Thomas Koopman and Rob H. Bisseling, Minimizing communication in the multidimensional FFT, SIAM Journal on Scientific Computing 45, No. 6 (2023) pp. C330-C347. Postprint version

Other publications

• R. H. Bisseling "Grootschalig rekenen is nieuw zelfstandig onderzoeksgebied" (in Dutch) Automatisering Gids, June 14, 1996.
  
• R. Bisseling "Een parallel buffet" (in Dutch)
  de Vakidioot, student magazine of the Faculties Mathematics and Computer Science, Physics and Astronomy, Utrecht University, March 1, 1998, pp. 14-18.
• P. M. A. Sloot, D. Frenkel, H. A. van der Vorst, A. van Kampen, H. E. Bal, P. Klint, R. M. M. Mattheij, J. van Wijk, J. Schaye, H.-J. Langevelde, R. H. Bisseling, B. Smit, E. Valenteyn, H. Sips, J. B. T. M. Roerdink, and K. G. Langedoen Computational e-Science: Studying complex systems in silico. A National Coordinated Initiative. White paper (February 2007).
• Rob H. Bisseling Parallel, groen en snel" (in Dutch). Inaugural lecture (oratie), as it appeared in Nieuw Archief voor Wiskunde, Vol. 5/11, Nr. 2, pp. 100-107.
• A Geometric Approach to Matrix Ordering by B. O. Fagginger Auer and Rob H. Bisseling, arXiv:1105.4490v1 (May 23, 2011).
• Rob H. Bisseling and Albert-Jan N. Yzelman, Thinking in Sync: The Bulk-Synchronous Parallel Approach to Large-Scale Computing Hot Topic in ACM Computing Reviews, Vol. 57, Nr. 6 (2016), pp. 322-327.